Construct: ORF ccsbBroadEn_13094
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007582.1_s300c1, BRDN0000455652
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC25A29 (123096)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 123096 | SLC25A29 | solute carrier family 25 me... | NM_001291813.2 | 100% | 100% | |
| 2 | human | 123096 | SLC25A29 | solute carrier family 25 me... | NM_001291814.2 | 100% | 100% | |
| 3 | human | 123096 | SLC25A29 | solute carrier family 25 me... | NM_001352820.2 | 100% | 100% | |
| 4 | human | 123096 | SLC25A29 | solute carrier family 25 me... | NM_001352822.2 | 100% | 100% | |
| 5 | human | 123096 | SLC25A29 | solute carrier family 25 me... | NM_001352823.2 | 100% | 100% | |
| 6 | human | 123096 | SLC25A29 | solute carrier family 25 me... | NM_152333.4 | 100% | 100% | |
| 7 | human | 123096 | SLC25A29 | solute carrier family 25 me... | XM_011536447.2 | 100% | 100% | |
| 8 | human | 123096 | SLC25A29 | solute carrier family 25 me... | XM_011536448.2 | 100% | 100% | |
| 9 | human | 123096 | SLC25A29 | solute carrier family 25 me... | XM_024449479.1 | 79.7% | 79.7% | 1_180del |
| 10 | human | 123096 | SLC25A29 | solute carrier family 25 me... | NM_001039355.3 | 78.2% | 78.2% | 1_198del |
| 11 | human | 123096 | SLC25A29 | solute carrier family 25 me... | XM_006720039.4 | 69.2% | 69.2% | 1_315del |
| 12 | human | 123096 | SLC25A29 | solute carrier family 25 me... | XM_006720038.2 | 67.7% | 67.7% | 1_339del |
| 13 | human | 123096 | SLC25A29 | solute carrier family 25 me... | NM_001352821.2 | 66.5% | 66.5% | 1_357del |
| 14 | human | 123096 | SLC25A29 | solute carrier family 25 me... | XR_001750155.1 | 16.2% | 1_659del;1371_4378del | |
| 15 | mouse | 214663 | Slc25a29 | solute carrier family 25 (m... | NM_181328.3 | 64.3% | 68.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 780
- ORF length:
- 711
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGGCTCACC TTCATCAACG CGCTGGTGTT CGGGGTGCAG GGCAACACCC 121 TCCGGGCCCT GGGCCACGAC TCGCCCCTCA ACCAGTTCCT GGCAGGTGCG GCGGCGGGCG 181 CCATCCAGTG CGTCATCTGC TGCCCCATGG AGCTGGCCAA GACGCGGCTG CAGCTGCAGG 241 ACGCGGGCCC AGCGCGCACC TACAAGGGCT CGCTGGACTG CCTCGCGCAG ATCTACGGGC 301 ACGAGGGTCT GCGTGGCGTC AACCGGGGCA TGGTGTCCAC GTTGCTGCGT GAGACGCCCA 361 GCTTCGGCGT CTACTTCCTC ACCTATGACG CTCTCACGCG GGCGCTGGGC TGCGAGCCGG 421 GCGACCGCCT GCTGGTGCCC AAGCTGCTGT TGGCGGGCGG TACGTCAGGC ATCGTGTCCT 481 GGCTCTCTAC CTATCCTGTG GACGTGGTCA AGTCGCGGCT GCAGGCGGAC GGACTGCGGG 541 GCGCCCCGCG CTACCGCGGC ATCCTGGACT GCGTGCACCA GAGCTACCGC GCCGAGGGCT 601 GGCGCGTCTT CACACGGGGG CTGGCGTCCA CGCTGCTGCG CGCCTTCCCC GTCAACGCTG 661 CCACCTTCGC CACCGTCACG GTGGTGCTCA CCTACGCGCG CGGCGAGGAG GCCGGGCCCG 721 AGGGCGAGGC TGTGCCCGCC GCCCCTGCGG GGCCTGCCCT GGCGCAGCCC TCCAGCCTGT 781 TGCCAACTTT CTTGTACAAA GTTGGcatta taagaaagca ttgcttatca atttgttgca 841 acgaac