Construct: ORF ccsbBroadEn_13209

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003494.1_s300c1, BRDN0000388439
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SIRPA (140885)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 140885 SIRPA signal regulatory protein a... NM_001330728.1 98.4% 97.4% (many diffs)
2 human 140885 SIRPA signal regulatory protein a... XM_005260670.3 98.4% 97.4% (many diffs)
3 human 140885 SIRPA signal regulatory protein a... XM_024451836.1 98.4% 97.4% (many diffs)
4 human 140885 SIRPA signal regulatory protein a... NM_001040022.1 97.7% 96.6% (many diffs)
5 human 140885 SIRPA signal regulatory protein a... NM_001040023.2 97.7% 96.6% (many diffs)
6 human 140885 SIRPA signal regulatory protein a... NM_080792.3 97.7% 96.6% (many diffs)
7 human 140885 SIRPA signal regulatory protein a... XM_011529173.2 94.6% 90.2% (many diffs)
8 human 10326 SIRPB1 signal regulatory protein b... NM_001135844.4 70.4% 64.5% (many diffs)
9 human 10326 SIRPB1 signal regulatory protein b... NM_001329157.2 70.4% 64.5% (many diffs)
10 human 10326 SIRPB1 signal regulatory protein b... XM_011529134.2 69.4% 64.5% (many diffs)
11 human 10326 SIRPB1 signal regulatory protein b... XR_001754121.1 69% (many diffs)
12 human 10326 SIRPB1 signal regulatory protein b... XM_005260641.3 67.2% 59.2% (many diffs)
13 human 10326 SIRPB1 signal regulatory protein b... NM_006065.4 67% 59% (many diffs)
14 human 10326 SIRPB1 signal regulatory protein b... XM_017027577.1 67% 59% (many diffs)
15 human 10326 SIRPB1 signal regulatory protein b... XM_017027578.1 66.6% 59.2% (many diffs)
16 human 10326 SIRPB1 signal regulatory protein b... XM_017027579.1 66.6% 59.2% (many diffs)
17 human 10326 SIRPB1 signal regulatory protein b... XM_017027580.1 66.6% 59.2% (many diffs)
18 human 55423 SIRPG signal regulatory protein g... NM_018556.4 65.3% 53.9% (many diffs)
19 human 10326 SIRPB1 signal regulatory protein b... XM_017027583.1 63.8% 58% (many diffs)
20 human 10326 SIRPB1 signal regulatory protein b... XM_017027584.1 63.8% 58% (many diffs)
21 human 55423 SIRPG signal regulatory protein g... XM_011529286.2 60.9% 51.9% (many diffs)
22 human 140885 SIRPA signal regulatory protein a... XM_006723545.4 55.7% 54.7% (many diffs)
23 human 10326 SIRPB1 signal regulatory protein b... XM_005260643.3 48.2% 41.7% (many diffs)
24 human 55423 SIRPG signal regulatory protein g... NM_001039508.1 45.2% 35.7% (many diffs)
25 human 55423 SIRPG signal regulatory protein g... XM_011529287.2 44.4% 37% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1587
ORF length:
1521
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GCCCGCCGGC CCGGCCCCCG GCCGCCTCGG GCCGCTGCTC TGCCTGCTGC
121TCGCCGCGTC CTGCGCCTGG TCAGGAGTGG CGGGTGAGGA GGAGCTGCAG GTGATTCAGC
181CTGACAAGTC CGTATCAGTT GCAGCTGGAG AGTCGGCCAT TCTGCACTGC ACTGTGACCT
241CCCTGATCCC TGTGGGGCCC ATCCAGTGGT TCAGAGGAGC TGGACCAGCC CGGGAATTAA
301TCTACAATCA AAAAGAAGGC CACTTCCCCC GGGTAACAAC TGTTTCAGAG TCCACAAAGA
361GAGAAAACAT GGACTTTTCC ATCAGCATCA GTAACATCAC CCCAGCAGAT GCCGGCACCT
421ACTACTGTGT GAAGTTCCGG AAAGGGAGCC CTGACACGGA GTTTAAGTCT GGAGCAGGCA
481CTGAGCTGTC TGTGCGTGCC AAACCCTCTG CCCCCGTGGT ATCGGGCCCT GCGGCGAGGG
541CCACACCTCA GCACACAGTG AGCTTCACCT GCGAGTCCCA CGGCTTCTCA CCCAGAGACA
601TCACCCTGAA ATGGTTCAAA AATGGGAATG AGCTCTCAGA CTTCCAGACC AACGTGGACC
661CCGTAGGAGA GAGCGTGTCC TACAGCATCC ACAGCACAGC CAAGGTGGTG CTGACCCGCG
721AGGACGTTCA CTCTCAAGTC ATCTGCGAGG TGGCCCACGT CACCTTGCAG GGGGACCCTC
781TTCGTGGGAC TGCCAACTTG TCTGAGACCA TCCGAGTTCC ACCCACCTTG GAGGTTACTC
841AACAGCCCGT GAGGGCAGAG AACCAGGTGA ATGTCACCTG CCAGGTGAGG AAGTTCTACC
901CCCAGAGACT ACAGCTGACC TGGTTGGAGA ATGGAAACGT GTCCCGGACA GAAACGGCCT
961CAACCGTTAC AGAGAACAAG GATGGTACCT ACAACTGGAT GAGCTGGCTC CTGGTGAATG
1021TATCTGCCCA CAGGGATGAT GTGAAGCTCA CCTGCCAGGT GGAGCATGAC GGGCAGCCAG
1081CGGTCAGCAA AAGCCATGAC CTGAAGGTCT CAGCCCACCC GAAGGAGCAG GGCTCAAATA
1141CCGCCGCTGA GAACACTGGA TCTAATGAAC GGAACATCTA TATTGTGGTG GGTGTGGTGT
1201GCACCTTGCT GGTGGCCCTA CTGATGGCGG CCCTCTACCT CGTCCGAATC AGACAGAAGA
1261AAGCCCAGGG CTCCACTTCT TCTACAAGGT TGCATGAGCC CGAGAAGAAT GCCAGAGAAA
1321TAACACAGGT ACAGTCCTTG GACACAAATG ATATCACATA TGCAGACCTG AACCTGCCCA
1381AGGGGAAGAA GCCTGCTCCC CAGGCTGCGG AGCCCAACAA CCACACGGAG TATGCCAGCA
1441TTCAGACCAG CCCGCAGCCC GCGTCGGAGG ACACCCTCAC CTATGCTGAC CTGGACATGG
1501TCCACCTCAA CCGGACCCCC AAGCAGCCGG CCCCCAAGCC TGAGCCGTCC TTCTCAGAGT
1561ACGCCAGCGT CCAGGTCCCG AGGAAGTGCC CAACTTTCTT GTACAAAGTt ggcattataa
1621gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)