Construct: ORF ccsbBroadEn_13369

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009021.1_s300c1, BRDN0000385211
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZFC3H1 (196441)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 196441 ZFC3H1 zinc finger C3H1-type conta... NM_144982.5 17.6% 17.1% (many diffs)
2 mouse 216345 Zfc3h1 zinc finger, C3H1-type cont... XM_006513541.3 27.5% 26.7% (many diffs)
3 mouse 216345 Zfc3h1 zinc finger, C3H1-type cont... NM_001033261.2 15.6% 15.2% (many diffs)
4 mouse 216345 Zfc3h1 zinc finger, C3H1-type cont... XM_006513540.3 15.6% 15.1% (many diffs)
5 mouse 216345 Zfc3h1 zinc finger, C3H1-type cont... XM_006513539.3 15.5% 15.1% (many diffs)
6 mouse 216345 Zfc3h1 zinc finger, C3H1-type cont... XM_006513538.3 15.5% 15.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1140
ORF length:
1074
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GACCGCAGAT ACTCCGGCCC CGGCCTCCAG TGGCCTCTCG CCGAAGGAAG
121AAGGGGAGCT TGAAGATGGG GAAATCAGTG ACGACGATAA TAACAGCCAG ATACGGAGTC
181GGAGCAGCAG CAGCAGCAGC GGCGGCGGGC TGTTACCCTA TCCGCGGCGA AGGCCTCCTC
241ACTCGGCCCG GGGCGGTGGA TCTGGCGGAG GCGGTGGCTC TTCCTCGTCA TCGTCCTCTT
301CTCAGCAGCA GCTGAGGAAT TTCTCACGCT CGCGGCACGC GTCTGAGCGG GGCCACCTCA
361GGGGACCCAG CAGCTACCGA CCCAAAGAAC CGTTCCGGTC TCATCCGCCT TCTGTACGGA
421TGCCTTCGAG CTCACTGTCC GAAAGCAGTC CCCGGCCGTC TTTCTGGGAG CGGAGCCACC
481TCGCCTTGGA CCGTTTCCGC TTTCGAGGCA GGCCTTACCG GGGTGGGAGT CGCTGGAGTC
541GGGGGCGAGG AGTGGGTGAG CGAGGAGGCA AGCCGGGGTG CAGACCTCCT CTGGGAGGAG
601GAGCAGGATC CGGGTTCAGC AGCAGTCAGA GCTGGCGAGA GCCCTCTCCA CCTCGGAAGA
661GCTCCAAAAG TTTTGGAAGG TCTCCATCAA GAAAACAAAA TTATTCATCA AAAAATGAAA
721ACTGTGTGGA AGAAACTTTT GAAGATTTGC TTTTAAAGTA TAAACAAATA CAGTTGGAAC
781TAGAATGCAT CAATAAGGAT GAAAAACTAG CATTGAGTAG CAAAGAAGAG AATGTGCAGG
841AAGATCCTAA AACATTGAAC TTCGAGGACC AAACTAGCAC TGATAATGTC AGTATTACAA
901AGGATTCAAG TAAAGAAGTA GCTCCTGAGG AGAAAACACA AGTCAAAACT TTTCAGGCAT
961TTGAATTAAA ACCACTCAGG CAAAAATTGA CTTTACCAGG AGATAAGAAC CGTTTGAAAA
1021AAGTTAAAGA TGGAGCAAAA CCACTTTCCC TGAAATCCGA CACTACTGAT TCTAGTCAAG
1081GTATCCCTTA TCGGGTAAAG GAGGGTTTTA CTCCTATTCC TGGTTTGAAA TTTTCAGCGT
1141GCCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
1201acgaac

Download FASTA (ORF) (Full)