Construct: ORF ccsbBroadEn_13381

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003200.1_s300c1, BRDN0000387867
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PLD5 (200150)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 200150 PLD5 phospholipase D family memb... XM_011544115.2 100% 100%
2 human 200150 PLD5 phospholipase D family memb... XM_011544116.2 100% 100%
3 human 200150 PLD5 phospholipase D family memb... NM_001320272.2 98.7% 95.1% 0_1insATGGGAGAGG;43_49delGGTAAGA
4 human 200150 PLD5 phospholipase D family memb... XM_017000567.2 98.7% 95.1% 0_1insATGGGAGAGG;43_49delGGTAAGA
5 human 200150 PLD5 phospholipase D family memb... XM_017000568.2 98.7% 95.1% 0_1insATGGGAGAGG;43_49delGGTAAGA
6 human 200150 PLD5 phospholipase D family memb... NM_001195811.1 93.8% 93.8% 1_87del
7 human 200150 PLD5 phospholipase D family memb... XM_024453867.1 90.2% 90.2% 1_144del
8 human 200150 PLD5 phospholipase D family memb... XM_011544119.2 84.3% 74.7% (many diffs)
9 human 200150 PLD5 phospholipase D family memb... NM_001372062.1 83% 83% 1_273del
10 human 200150 PLD5 phospholipase D family memb... NM_001195812.2 73.7% 73.7% 0_1ins351
11 human 200150 PLD5 phospholipase D family memb... XM_011544120.2 73.7% 73.7% 0_1ins351
12 human 200150 PLD5 phospholipase D family memb... XM_011544121.2 73.7% 73.7% 0_1ins351
13 human 200150 PLD5 phospholipase D family memb... XM_011544122.3 73.7% 73.7% 0_1ins351
14 human 200150 PLD5 phospholipase D family memb... XM_017000569.1 73.7% 73.7% 0_1ins351
15 human 200150 PLD5 phospholipase D family memb... XM_017000570.2 73.7% 73.7% 0_1ins351
16 mouse 319455 Pld5 phospholipase D family, mem... XM_011238826.2 87.1% 90.3% (many diffs)
17 mouse 319455 Pld5 phospholipase D family, mem... XM_017321154.1 87.1% 90.3% (many diffs)
18 mouse 319455 Pld5 phospholipase D family, mem... NM_001195816.1 82.9% 87.5% (many diffs)
19 mouse 319455 Pld5 phospholipase D family, mem... XM_006496898.3 73.7% 77.3% (many diffs)
20 mouse 319455 Pld5 phospholipase D family, mem... NM_176916.4 73.3% 77.4% (many diffs)
21 mouse 319455 Pld5 phospholipase D family, mem... XM_011238827.2 66.8% 69.2% (many diffs)
22 mouse 319455 Pld5 phospholipase D family, mem... XM_006496900.3 64.8% 67.8% (many diffs)
23 mouse 319455 Pld5 phospholipase D family, mem... XM_011238828.1 64.8% 67.8% (many diffs)
24 mouse 319455 Pld5 phospholipase D family, mem... XM_011238829.2 64.8% 67.8% (many diffs)
25 mouse 319455 Pld5 phospholipase D family, mem... XM_017321175.1 64.8% 67.8% (many diffs)
26 mouse 319455 Pld5 phospholipase D family, mem... XM_006496897.3 64.8% 68% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1404
ORF length:
1335
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGGAGAGGAT GAGGATGGAC TCTCAGAAAA AAATTGCCAA AATAAATGTC
121GAATTGCCCT GGTGGAAAAT ATTCCTGAAG GCCTTAACTA TTCAGAAAAT GCACCATTTC
181ACTTATCACT TTTCCAAGGC TGGATGAATT TACTCAACAT GGCCAAAAAG TCTGTTGACA
241TAGTGTCTTC CCATTGGGAT CTCAACCACA CTCATCCATC AGCATGTCAG GGTCAACGTC
301TTTTTGAAAA GTTGCTCCAG CTGACTTCGC AAAATATTGA AATCAAGCTA GTGAGTGATG
361TAACAGCTGA TTCAAAGGTA TTAGAAGCCT TGAAATTAAA GGGAGCCGAG GTGACGTACA
421TGAACATGAC CGCTTACAAC AAGGGCCGGC TGCAGTCCTC CTTCTGGATC GTGGACAAAC
481AGCACGTGTA TATCGGCAGT GCCGGTTTGG ACTGGCAATC CCTGGGACAG ATGAAAGAAC
541TCGGTGTCAT CTTCTACAAC TGCAGCTGCC TGGTCCTAGA TTTACAAAGG ATATTTGCTC
601TATATAGTTC ATTAAAATTC AAAAGCAGAG TGCCTCAAAC CTGGTCCAAA AGACTCTATG
661GAGTCTATGA CAATGAAAAG AAATTGCAAC TTCAGTTGAA TGAAACCAAA TCTCAAGCAT
721TTGTATCGAA TTCTCCAAAA CTCTTTTGCC CTAAAAACAG AAGTTTTGAC ATAGATGCCA
781TCTACAGTGT GATAGATGAT GCCAAGCAGT ATGTGTACAT CGCTGTCATG GACTACCTGC
841CTATCTCCAG CACAAGCACC AAAAGGACTT ACTGGCCAGA CTTGGATGCA AAAATAAGAG
901AAGCATTAGT TTTACGAAGC GTTAGAGTTC GACTCCTTTT AAGCTTCTGG AAGGAAACTG
961ATCCCCTTAC GTTTAACTTT ATTTCATCTC TTAAAGCGAT TTGCACTGAA ATAGCCAACT
1021GCAGTTTGAA AGTTAAATTT TTTGATCTGG AAAGAGAGAA TGCTTGTGCT ACAAAAGAAC
1081AAAAGAATCA CACCTTTCCT AGGTTAAATC GCAACAAGTA CATGGTGACA GATGGAGCAG
1141CTTATATTGG AAATTTTGAT TGGGTAGGGA ATGATTTCAC TCAGAATGCT GGCACGGGCC
1201TTGTTATCAA CCAGGCAGAT GTGAGGAACA ACAGAAGCAT CATTAAGCAA CTTAAAGATG
1261TGTTTGAAAG GGACTGGTAT TCACCGTATG CCAAAACCTT ACAGCCAACC AAACAGCCGA
1321ACTGCTCAAG CCTGTTCAAA CTCAAACCCC TCTCCAACAA AACTGCCACA GACGACACAG
1381GCGGAAAGGA TCCCCGGAAC GTATTGCCAA CTTTCTTGTA CAAAGTtggc attataagaa
1441agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)