Construct: ORF ccsbBroadEn_13436

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012202.1_s300c1, BRDN0000390389
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ATXN7L1 (222255)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 222255 ATXN7L1 ataxin 7 like 1 XM_006715904.3 79% 79% 1_423del
2 human 222255 ATXN7L1 ataxin 7 like 1 XM_011515946.1 79% 79% 1_423del
3 human 222255 ATXN7L1 ataxin 7 like 1 XM_011515947.1 79% 79% 1_423del
4 human 222255 ATXN7L1 ataxin 7 like 1 XM_017011860.2 79% 79% 1_423del
5 human 222255 ATXN7L1 ataxin 7 like 1 XM_017011861.1 79% 79% 1_423del
6 human 222255 ATXN7L1 ataxin 7 like 1 XM_011515945.1 70.2% 70.2% 1_678del
7 human 222255 ATXN7L1 ataxin 7 like 1 XM_011515941.2 62.6% 62.6% 1_954del
8 human 222255 ATXN7L1 ataxin 7 like 1 XM_011515942.2 62.6% 62.6% 1_954del
9 human 222255 ATXN7L1 ataxin 7 like 1 XM_011515943.2 62.6% 62.6% 1_954del
10 human 222255 ATXN7L1 ataxin 7 like 1 XM_011515944.1 62.6% 62.6% 1_954del
11 human 222255 ATXN7L1 ataxin 7 like 1 XM_011515938.2 61.1% 61.1% 1_1017del
12 human 222255 ATXN7L1 ataxin 7 like 1 XM_011515936.2 58.6% 58.6% 1_1128del
13 human 222255 ATXN7L1 ataxin 7 like 1 XM_017011858.1 58.5% 58.5% 1_1134del
14 human 222255 ATXN7L1 ataxin 7 like 1 NM_001318229.2 56.7% 56.7% 1_678del;869_870ins306
15 human 222255 ATXN7L1 ataxin 7 like 1 XM_006715900.3 54.6% 54.6% 1_1326del
16 human 222255 ATXN7L1 ataxin 7 like 1 XM_011515935.2 51% 49.8% (many diffs)
17 human 222255 ATXN7L1 ataxin 7 like 1 XM_006715901.3 51% 50.6% (many diffs)
18 human 222255 ATXN7L1 ataxin 7 like 1 XM_017011859.1 50.6% 50.6% 1_954del;1145_1146ins306
19 human 222255 ATXN7L1 ataxin 7 like 1 NM_138495.1 46.5% 46% (many diffs)
20 human 222255 ATXN7L1 ataxin 7 like 1 XM_011515937.3 44.2% 44.2% 1_1326del;1517_1518ins306
21 human 222255 ATXN7L1 ataxin 7 like 1 XM_006715903.4 42.4% 40.1% 1_1326del;2499_2500ins130;2568_2569ins227
22 human 222255 ATXN7L1 ataxin 7 like 1 XM_006715902.4 42.1% 41.1% (many diffs)
23 human 222255 ATXN7L1 ataxin 7 like 1 XM_011515939.2 42% 41.7% (many diffs)
24 human 222255 ATXN7L1 ataxin 7 like 1 XR_927411.2 41.9% (many diffs)
25 human 222255 ATXN7L1 ataxin 7 like 1 XM_005250220.4 40.7% 40.2% (many diffs)
26 human 222255 ATXN7L1 ataxin 7 like 1 NM_020725.1 40.7% 39.5% (many diffs)
27 human 222255 ATXN7L1 ataxin 7 like 1 XM_011515940.2 40.7% 39.5% (many diffs)
28 human 222255 ATXN7L1 ataxin 7 like 1 XR_001744596.2 37.7% (many diffs)
29 mouse 380753 Atxn7l1 ataxin 7-like 1 XM_006515136.2 65.1% 64.7% (many diffs)
30 mouse 380753 Atxn7l1 ataxin 7-like 1 XM_017315124.1 62.4% 62% (many diffs)
31 mouse 380753 Atxn7l1 ataxin 7-like 1 XM_006515132.3 58% 57.6% (many diffs)
32 mouse 380753 Atxn7l1 ataxin 7-like 1 XM_006515133.1 58% 57.6% (many diffs)
33 mouse 380753 Atxn7l1 ataxin 7-like 1 XM_006515134.3 58% 57.6% (many diffs)
34 mouse 380753 Atxn7l1 ataxin 7-like 1 XM_011243880.1 58% 57.6% (many diffs)
35 mouse 380753 Atxn7l1 ataxin 7-like 1 XM_017315123.1 57% 56.6% (many diffs)
36 mouse 380753 Atxn7l1 ataxin 7-like 1 XM_006515126.3 51.8% 51.5% (many diffs)
37 mouse 380753 Atxn7l1 ataxin 7-like 1 XM_006515123.3 50.6% 50.3% (many diffs)
38 mouse 380753 Atxn7l1 ataxin 7-like 1 XM_006515124.3 48.1% 48.1% (many diffs)
39 mouse 380753 Atxn7l1 ataxin 7-like 1 XM_006515125.3 48.1% 47.5% (many diffs)
40 mouse 380753 Atxn7l1 ataxin 7-like 1 NM_001033436.3 46.4% 46.2% (many diffs)
41 mouse 380753 Atxn7l1 ataxin 7-like 1 XM_011243881.2 43.6% 43.7% (many diffs)
42 mouse 380753 Atxn7l1 ataxin 7-like 1 XM_006515128.3 40.5% 40.3% (many diffs)
43 mouse 380753 Atxn7l1 ataxin 7-like 1 XM_006515129.3 38.1% 38.1% (many diffs)
44 mouse 380753 Atxn7l1 ataxin 7-like 1 XM_006515130.3 38.1% 37.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1665
ORF length:
1599
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA CGGAGCCGAC GAATCCGAGA AGCTAGACTG TCAGTTCTCC ACGCACCACC
121CCAGACCTCT GGCGTTTTGC TCATTTGGGA GTCGCCTCAT GGGACGAGGG TACTATGTGT
181TTGATAGAAG ATGGGATCGT TTTCGATTCG CACTAAACTC CATGGTAGAA AAACACCTGA
241ATTCACAGAT GTGGAAGCAC AGAAACCCGA GCCACAGGGC ATCAGGTCCC TCCCCCCTGT
301TCAGGACTTG CCTAACCAAT CTGCTGTCAC TGAGCAACAT TGGGGCTGCC TGGGTGTCAA
361CTCTGGAGAG CGTAGCACCC CGCTACCCTC TCAACCTCGC TGCCCAAACC CCAGGCCCCG
421GCGGGCCCGA ACCTGGAGGG ATGGCAGCCG ATGGGGGCGT GGAAGACATT AGGAAGAAAA
481GGAACGGCCA AGACTCTTTT TTCTTTAACA AGCATTTAAC TCTGCATCAG GAGCCGCCAA
541CACAGTATTC TCTTTCAGCC AGGAAGATCC CTCCTGCGGC AGATAGCCCC CTGCCCTCGC
601CAGCAGCCCA CATCACCACC CCCGTTCCAG CATCCGTTTT GCAGCCTTTC AGCAACCCCA
661GTGCTGTGTA TCTTCCTTCA GCTCCCATCA GCTCGAGGCT CACCTCTTCT TACATAATGA
721CATCAGCCAT GCTCTCAAAC GCAGCTTTCG TGACATCGCC GGACCCGAGC GCCCTCATGT
781CCCACACCAC AGCTTTCCCT CATGTGGCCG CAACCCTCAG CATCATGGAC TCAACCTTCA
841AGGCCCCATC CGCCGTGTCC CCGATACCAG CCGTCATCCC TTCCCCATCC CACAAGCCAT
901CCAAAACCAA AACCAGCAAA TCCTCAAAAG TCAAAGACCT GTCCACCCGT AGCGACGAGT
961CTCCAAGTAA CAAAAAAAGG AAGCCACAGT CTTCGACTTC CTCCTCCTCC TCCTCCTCCT
1021CCTCTTCCTT GCAGACATCC CTCTCGTCTC CACTGTCAGG GCCTCACAAA AAGAACTGTG
1081TTTTGAATGC CAGTTCTGCT TTGAACTCCT ATCAGGCGGC CCCTCCCTAT AACAGCCTGT
1141CTGTGCACAA CTCAAACAAT GGGGTGAGCC CACTCAGTGC CAAACTGGAG CCCTCAGGAC
1201GGACCTCGCT GCCCGGCGGC CCCGCGGACA TAGTGAGACA GGTGGGCGCG GTGGGAGGCA
1261GCAGTGACTC CTGTCCCCTC TCTGTGCCCT CCCTTGCGCT CCACGCAGGG GACCTCTCTC
1321TGGCCTCACA CAATGCTGTG TCTTCTCTGC CCCTCTCTTT TGACAAATCA GAAGGAAAAA
1381AGCGTAAGAA CTCGAGTTCT AGTAGCAAAG CCTGTAAAAT CACTAAAATG CCTGGTATGA
1441ATAGCGTTCA CAAAAAGAAC CCGCCCAGCC TTCTCGCACC GGTGCCCGAT CCCGTTAACA
1501GCACCTCCTC TCGGCAGGTA AGGGACCTCC TGGCACCGCC TTCACCGGCT CTGGGGGGCA
1561GGGGGAGCTG GGCAGCGCCC CTGCTTAGCC GGGCGGCTCC GACAGGTAAC ACAAGCTTGA
1621TTCCTGTTCT CGTTTTCCCC GAAGGCAGTT TTCACCCTCT GCTTTGCCCA ACTTTCTTGT
1681ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)