Construct: ORF ccsbBroadEn_13507
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010826.1_s300c1, BRDN0000456077
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LOC283788 (283788)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 102724813 | LOC102724813 | protein FRG1B | XM_011546192.2 | 81.4% | 78.4% | (many diffs) |
| 2 | human | 102724813 | LOC102724813 | protein FRG1B | XM_011546196.3 | 80.2% | 76.4% | (many diffs) |
| 3 | human | 102724813 | LOC102724813 | protein FRG1B | XM_011546191.3 | 78.9% | 67.1% | (many diffs) |
| 4 | human | 2483 | FRG1 | FSHD region gene 1 | XM_017007958.1 | 73.1% | 68.7% | (many diffs) |
| 5 | human | 102724813 | LOC102724813 | protein FRG1B | XM_011546190.3 | 70.2% | 57.3% | (many diffs) |
| 6 | human | 102724813 | LOC102724813 | protein FRG1B | XM_017030110.1 | 70.2% | 57.3% | (many diffs) |
| 7 | human | 100289097 | FRG1CP | FSHD region gene 1 family m... | NR_132315.1 | 39% | (many diffs) | |
| 8 | human | 2483 | FRG1 | FSHD region gene 1 | NM_004477.3 | 38.7% | 36.3% | (many diffs) |
| 9 | human | 284802 | FRG1BP | FSHD region gene 1 family m... | NR_003579.2 | 33.7% | (many diffs) | |
| 10 | human | 102723780 | FRG1FP | FSHD region gene 1 family m... | NR_132320.1 | 24.9% | (many diffs) | |
| 11 | human | 642236 | FRG1JP | FSHD region gene 1 family m... | NR_033907.2 | 22.2% | (many diffs) | |
| 12 | human | 284802 | FRG1BP | FSHD region gene 1 family m... | NR_145491.1 | 10.4% | (many diffs) | |
| 13 | human | 283788 | LOC283788 | FSHD region gene 1 pseudogene | NR_027436.2 | 9.5% | (many diffs) | |
| 14 | mouse | 14300 | Frg1 | FSHD region gene 1 | NM_013522.3 | 36.3% | 35.6% | (many diffs) |
| 15 | mouse | 14300 | Frg1 | FSHD region gene 1 | XM_017312570.1 | 36.3% | 35.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 438
- ORF length:
- 369
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCTTTGTTG GCCTCAAATG GCTGCTTTAT TAGATGCAAT GAAGCAGGGG 121 ACATAGAAGC AAAAAGTAAA ACAGCAGGAG AAGAAGAAAT GATCAAGATT AGATCCTGTG 181 CTGAAAGAGA AACCAAGAAA AAAGATGACA TTCCAGAAGA AGACAAAGGA AATGTCAAAC 241 AATGTGAAAT CAATTATGTA AAGAAATTTC AGAGCTTCCA AGAGCACAAA CTTAAAATAA 301 GTAAAGAAGA CAGTAAAATT CTTAAAAAGG CTCAGAAAGA TGGATTTTTG CATGAGACGC 361 TTCTGGACAG TTTAGGCTAT GAGCATAGAT GGAAGAGGTG GCTGCTGTAT TGGATCAAGG 421 ATATGAGCAG AGATGGATTG CCAACTTTCT TGTACAAAGT TGGcattata agaaagcatt 481 gcttatcaat ttgttgcaac gaac