Construct: ORF ccsbBroadEn_13507

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010826.1_s300c1, BRDN0000456077
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LOC283788 (283788)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 102724813 LOC102724813 protein FRG1B XM_011546192.2 81.4% 78.4% (many diffs)
2 human 102724813 LOC102724813 protein FRG1B XM_011546196.3 80.2% 76.4% (many diffs)
3 human 102724813 LOC102724813 protein FRG1B XM_011546191.3 78.9% 67.1% (many diffs)
4 human 2483 FRG1 FSHD region gene 1 XM_017007958.1 73.1% 68.7% (many diffs)
5 human 102724813 LOC102724813 protein FRG1B XM_011546190.3 70.2% 57.3% (many diffs)
6 human 102724813 LOC102724813 protein FRG1B XM_017030110.1 70.2% 57.3% (many diffs)
7 human 100289097 FRG1CP FSHD region gene 1 family m... NR_132315.1 39% (many diffs)
8 human 2483 FRG1 FSHD region gene 1 NM_004477.3 38.7% 36.3% (many diffs)
9 human 284802 FRG1BP FSHD region gene 1 family m... NR_003579.2 33.7% (many diffs)
10 human 102723780 FRG1FP FSHD region gene 1 family m... NR_132320.1 24.9% (many diffs)
11 human 642236 FRG1JP FSHD region gene 1 family m... NR_033907.2 22.2% (many diffs)
12 human 284802 FRG1BP FSHD region gene 1 family m... NR_145491.1 10.4% (many diffs)
13 human 283788 LOC283788 FSHD region gene 1 pseudogene NR_027436.2 9.5% (many diffs)
14 mouse 14300 Frg1 FSHD region gene 1 NM_013522.3 36.3% 35.6% (many diffs)
15 mouse 14300 Frg1 FSHD region gene 1 XM_017312570.1 36.3% 35.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
438
ORF length:
369
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCTTTGTTG GCCTCAAATG GCTGCTTTAT TAGATGCAAT GAAGCAGGGG
121ACATAGAAGC AAAAAGTAAA ACAGCAGGAG AAGAAGAAAT GATCAAGATT AGATCCTGTG
181CTGAAAGAGA AACCAAGAAA AAAGATGACA TTCCAGAAGA AGACAAAGGA AATGTCAAAC
241AATGTGAAAT CAATTATGTA AAGAAATTTC AGAGCTTCCA AGAGCACAAA CTTAAAATAA
301GTAAAGAAGA CAGTAAAATT CTTAAAAAGG CTCAGAAAGA TGGATTTTTG CATGAGACGC
361TTCTGGACAG TTTAGGCTAT GAGCATAGAT GGAAGAGGTG GCTGCTGTAT TGGATCAAGG
421ATATGAGCAG AGATGGATTG CCAACTTTCT TGTACAAAGT TGGcattata agaaagcatt
481gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)