Construct: ORF ccsbBroadEn_13593
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007266.1_s300c1, BRDN0000396244
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC158 (339965)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 339965 | CCDC158 | coiled-coil domain containi... | XR_938730.2 | 22.9% | 1_281del;885delA;958_2944del | |
| 2 | human | 339965 | CCDC158 | coiled-coil domain containi... | XM_011531915.2 | 21.1% | 19% | 604delA;677_3198del |
| 3 | human | 339965 | CCDC158 | coiled-coil domain containi... | XR_938729.2 | 20.8% | 1_280del;884delA;957_3232del | |
| 4 | human | 339965 | CCDC158 | coiled-coil domain containi... | NM_001042784.1 | 20.2% | 18.2% | 604delA;677_3339del |
| 5 | human | 339965 | CCDC158 | coiled-coil domain containi... | XM_005262974.4 | 20.2% | 18.2% | 604delA;677_3339del |
| 6 | human | 339965 | CCDC158 | coiled-coil domain containi... | XM_006714204.3 | 20.1% | 18.2% | 604delA;677_3351del |
| 7 | human | 339965 | CCDC158 | coiled-coil domain containi... | XM_011531908.2 | 20.1% | 18.2% | 604delA;677_3351del |
| 8 | human | 339965 | CCDC158 | coiled-coil domain containi... | XM_011531909.2 | 20.1% | 18.2% | 604delA;677_3351del |
| 9 | human | 339965 | CCDC158 | coiled-coil domain containi... | XM_011531910.3 | 20.1% | 18.2% | 604delA;677_3351del |
| 10 | human | 339965 | CCDC158 | coiled-coil domain containi... | XM_011531911.1 | 20.1% | 18.2% | 604delA;677_3351del |
| 11 | human | 339965 | CCDC158 | coiled-coil domain containi... | XM_011531912.2 | 20.1% | 18.2% | 604delA;677_3351del |
| 12 | human | 339965 | CCDC158 | coiled-coil domain containi... | XM_011531913.1 | 20.1% | 18.2% | 604delA;677_3351del |
| 13 | human | 339965 | CCDC158 | coiled-coil domain containi... | XM_011531914.2 | 20.1% | 18.2% | 604delA;677_3351del |
| 14 | human | 339965 | CCDC158 | coiled-coil domain containi... | XM_017008160.1 | 20.1% | 18.2% | 604delA;677_3351del |
| 15 | human | 339965 | CCDC158 | coiled-coil domain containi... | XM_011531916.2 | 12.8% | 10% | (many diffs) |
| 16 | human | 339965 | CCDC158 | coiled-coil domain containi... | XM_011531917.1 | 12.8% | 10% | (many diffs) |
| 17 | mouse | 320696 | Ccdc158 | coiled-coil domain containi... | XM_006534996.2 | 19.3% | 17.5% | (many diffs) |
| 18 | mouse | 320696 | Ccdc158 | coiled-coil domain containi... | XM_011249479.1 | 19% | 17.2% | (many diffs) |
| 19 | mouse | 320696 | Ccdc158 | coiled-coil domain containi... | XM_006534995.2 | 18.7% | 17% | (many diffs) |
| 20 | mouse | 320696 | Ccdc158 | coiled-coil domain containi... | XM_006534994.2 | 18.6% | 16.9% | (many diffs) |
| 21 | mouse | 320696 | Ccdc158 | coiled-coil domain containi... | XM_006534993.2 | 18.3% | 16.6% | (many diffs) |
| 22 | mouse | 320696 | Ccdc158 | coiled-coil domain containi... | XM_006534992.2 | 18.1% | 16.5% | (many diffs) |
| 23 | mouse | 320696 | Ccdc158 | coiled-coil domain containi... | NM_177230.3 | 18.1% | 16.4% | (many diffs) |
| 24 | mouse | 320696 | Ccdc158 | coiled-coil domain containi... | XM_011249478.1 | 18% | 16.3% | (many diffs) |
| 25 | mouse | 320696 | Ccdc158 | coiled-coil domain containi... | XM_006534991.2 | 17.9% | 16.2% | (many diffs) |
| 26 | mouse | 320696 | Ccdc158 | coiled-coil domain containi... | XM_006534988.2 | 17.8% | 16.2% | (many diffs) |
| 27 | mouse | 320696 | Ccdc158 | coiled-coil domain containi... | XM_006534989.3 | 17.8% | 16.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 741
- ORF length:
- 675
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA ATCAAAAGCT TGGGAATCAA ATAATGAAGA TCTTTTATCA AGTAGTGGTG 121 TCACATCTAA TGGAGGTTCT TCAAGTTCAT TTTTTGTGTC ATCTATTCGT GGTACAATAA 181 TTGAAAACAC ATCTTCAGCT GGGACTTTGA CACAGGTTCC TTTTTTCCCT AAATATGAAG 241 TGGAACTTGA TTCTCCTAGA AAAATCATCC CATCTCCTGG AAAGGAACAC TTTGAACGTG 301 TTTTGGAAGA ATATTCACAT CAAGTCAAAG ATTTACAGAG AAGACTAAAT GAAAGCAATG 361 AATTGCATGA GAAACAAAAG TTTTATTTGA GGCAGTCAGT CATTGATTTG CAAACAAAAC 421 TTCAGGAGAT GCAAATGGAG AGAGATGCTA TGGCTGACAT CAGACGAAGG GAGAGTCAGT 481 CCCAGGAGGA TTTAAGAAAT CAGCTTCAAA ATACAGTTCA TGAACTTGAA GCTGCCAAAT 541 GCCTTAAAGA GGACATGCTG AAAGACAGCA ACACACAGAT AGAGCAACTA CGAAAAATGA 601 TGCTTAGTCA TGAGGGAGTG CTTCAAGAAA TCCGGTCAAT CCTAGTTGAC TTTGAAGAAG 661 CCTCAGGCAA AAAATATGTG AACATGACAG CATGTCTACT CTGCACTTCC GCAGCTTGGG 721 CTCAGCTATT AGTAAAATAC TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 781 attgcttatc aatttgttgc aacgaac