Construct: ORF ccsbBroadEn_13690
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017883.1_s300c1, BRDN0000455727
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GOLGA6L9 (440295)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 440295 | GOLGA6L9 | golgin A6 family like 9 | NM_001291420.1 | 100% | 100% | |
| 2 | human | 440295 | GOLGA6L9 | golgin A6 family like 9 | XM_011521601.2 | 66.5% | 66.5% | 1_414del |
| 3 | human | 440295 | GOLGA6L9 | golgin A6 family like 9 | NM_198181.3 | 63.4% | 63.4% | 1_474del |
| 4 | human | 643707 | GOLGA6L4 | golgin A6 family like 4 | XM_017022481.1 | 52.2% | 52.1% | (many diffs) |
| 5 | human | 643707 | GOLGA6L4 | golgin A6 family like 4 | XM_017022482.1 | 52.2% | 52.1% | (many diffs) |
| 6 | human | 647042 | GOLGA6L10 | golgin A6 family like 10 | NM_001164465.3 | 52.1% | 51.9% | (many diffs) |
| 7 | human | 100133220 | GOLGA6L3 | golgin A6 family like 3 | NM_001310153.2 | 51.3% | 50.9% | (many diffs) |
| 8 | human | 647042 | GOLGA6L10 | golgin A6 family like 10 | NM_001322400.1 | 50.8% | 50.1% | (many diffs) |
| 9 | human | 101927601 | GOLGA6L19 | golgin A6 family like 19 | XM_006725184.3 | 49.3% | 48.9% | (many diffs) |
| 10 | human | 643707 | GOLGA6L4 | golgin A6 family like 4 | NM_001267536.3 | 47.4% | 47.3% | (many diffs) |
| 11 | human | 642402 | GOLGA6L17P | golgin A6 family like 17, p... | NR_111962.1 | 43.8% | (many diffs) | |
| 12 | human | 102724117 | LOC102724117 | golgin subfamily A member 6... | XR_429586.2 | 18.4% | (many diffs) | |
| 13 | human | 102724093 | LOC102724093 | golgin subfamily A member 6... | XR_429585.4 | 16.9% | (many diffs) | |
| 14 | human | 374650 | GOLGA6L5P | golgin A6 family like 5, ps... | NR_003246.4 | 14.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 888
- ORF length:
- 822
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GCAGCTACAA GATGAGACCA ACCACCTAAG GAAGGAGCTA GAGAGTGTGG 121 GAAGACAGCT CCAGGCTGAG GTGGAAAACA ATCAGATGTT GAGTCTCCTG AACAGGAGAC 181 AGGAGGAGAG GCTACGTGAA CAGGAGGAGA GGCTACGTGA ACAGGAGGAG AGGCTGTGTG 241 AACAGGAGGA GAGGCTGTGT GAACAGGAGG AGAGGCTACG TGAACAGGAG GAGAGGCTGT 301 GTGAACAGGA GAAGCTGCCA GGGCAGGAGA GGCTGCTGGA AGAGGTGGAG AAGCTGTTAG 361 AACAGGAGAG GCGGCAGGAG GAGCAGGAGA GGCTGCTGGA GAGGGAGAGG CTGCTGGACG 421 AGGTGGAGGA GCTCCTGGAG CAGGAGAGGC TTCGGCAACA GGATGAGAGG CTGTGGCAGC 481 AGGAGACTCT GCGGGAGCTG GAGAGGCTGC GGGAGCTGGA GAGGATGCTG GAGCTGGGGT 541 GGGAAGCCCT GTACGAGCAG CGGGCCGAGC CACGCAGCGG CTTCGAGGAG CTGAACAACG 601 AGAACAAGAG CACACTGCAG TTGGAGCAGC AAGTAAAGGA GCTGGAGAAG TCGGGTGGAG 661 CTGAAGAGCC AAGAGGCTCC GAGTCTGCAG CAGCAGCCAG ACCAGTAGCT GGAGCCCCAG 721 TCCCACAAGG AGCTTGGATG TGCGGACAAG CAGGGTGGAC TCCCCAGGAG CACCCAGGCT 781 TGAGTGGAGA AGCTGTTGGT ACAGGAGAGG CGGCAGGAGG AGCAGGAGAG GCTGCATGCC 841 ATTCTTTTCG GGCTGCCGAG AACAGGGAGC TAAACATCAC CATCATCTAC CCAACTTTCT 901 TGTACAAAGT TGGcattata agaaagcatt gcttatcaat ttgttgcaac gaac