Construct: ORF ccsbBroadEn_13694
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014777.1_s300c1, BRDN0000391920
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MTHFD2L (441024)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 441024 | MTHFD2L | methylenetetrahydrofolate d... | XM_017008230.1 | 61.5% | 57.9% | (many diffs) |
| 2 | human | 441024 | MTHFD2L | methylenetetrahydrofolate d... | XM_017008234.1 | 61.3% | 57.2% | (many diffs) |
| 3 | human | 441024 | MTHFD2L | methylenetetrahydrofolate d... | NM_001351310.1 | 61.3% | 57.8% | (many diffs) |
| 4 | human | 441024 | MTHFD2L | methylenetetrahydrofolate d... | NM_001351311.1 | 61.3% | 57.8% | (many diffs) |
| 5 | human | 441024 | MTHFD2L | methylenetetrahydrofolate d... | XM_017008229.1 | 61.3% | 57.8% | (many diffs) |
| 6 | human | 441024 | MTHFD2L | methylenetetrahydrofolate d... | NM_001351314.2 | 59.4% | 55.4% | (many diffs) |
| 7 | human | 441024 | MTHFD2L | methylenetetrahydrofolate d... | XM_017008228.1 | 58% | 54.2% | (many diffs) |
| 8 | human | 441024 | MTHFD2L | methylenetetrahydrofolate d... | NM_001004346.4 | 47.7% | 46.3% | (many diffs) |
| 9 | human | 441024 | MTHFD2L | methylenetetrahydrofolate d... | XM_005265690.2 | 46.8% | 45.4% | (many diffs) |
| 10 | human | 441024 | MTHFD2L | methylenetetrahydrofolate d... | XM_017008225.1 | 46.8% | 45.4% | (many diffs) |
| 11 | human | 441024 | MTHFD2L | methylenetetrahydrofolate d... | XM_017008226.1 | 46.8% | 45.4% | (many diffs) |
| 12 | human | 441024 | MTHFD2L | methylenetetrahydrofolate d... | XM_017008224.1 | 42.2% | 40.9% | (many diffs) |
| 13 | human | 441024 | MTHFD2L | methylenetetrahydrofolate d... | NM_001144978.2 | 39.8% | 38.6% | (many diffs) |
| 14 | human | 441024 | MTHFD2L | methylenetetrahydrofolate d... | XM_017008221.2 | 36.1% | 34.2% | (many diffs) |
| 15 | human | 441024 | MTHFD2L | methylenetetrahydrofolate d... | XM_017008220.2 | 36% | 34.3% | (many diffs) |
| 16 | human | 441024 | MTHFD2L | methylenetetrahydrofolate d... | XM_017008222.2 | 36% | 33.9% | (many diffs) |
| 17 | human | 441024 | MTHFD2L | methylenetetrahydrofolate d... | XM_017008223.2 | 35.5% | 34.6% | (many diffs) |
| 18 | human | 441024 | MTHFD2L | methylenetetrahydrofolate d... | XM_017008219.2 | 35.1% | 32.8% | (many diffs) |
| 19 | human | 441024 | MTHFD2L | methylenetetrahydrofolate d... | XM_017008218.2 | 30.4% | 29.3% | (many diffs) |
| 20 | human | 441024 | MTHFD2L | methylenetetrahydrofolate d... | XR_001741223.2 | 25.8% | 1_805del;1111_1280del;1340_1341ins73 | |
| 21 | human | 441024 | MTHFD2L | methylenetetrahydrofolate d... | NR_147097.2 | 16.6% | (many diffs) | |
| 22 | human | 441024 | MTHFD2L | methylenetetrahydrofolate d... | XR_001741224.2 | 14.7% | (many diffs) | |
| 23 | human | 441024 | MTHFD2L | methylenetetrahydrofolate d... | XR_001741222.2 | 14.6% | (many diffs) | |
| 24 | mouse | 665563 | Mthfd2l | methylenetetrahydrofolate d... | XM_006535177.3 | 38.1% | 40.1% | (many diffs) |
| 25 | mouse | 665563 | Mthfd2l | methylenetetrahydrofolate d... | NM_026788.1 | 36.4% | 38.4% | (many diffs) |
| 26 | mouse | 665563 | Mthfd2l | methylenetetrahydrofolate d... | XM_006535176.3 | 33.6% | 35.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 504
- ORF length:
- 438
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CCCAAGAGTC AGCGGTATAT TAGTTCAGTT ACCACTACCA GACCACGTTG 121 ATGAGCGAAC AATATGCAAT GGAATTGCCC CAGAAAAAGA TGTAGATGGA TTTCATATTA 181 TCAATATTGG AAGATTGTGC CTTGATCAGC ATTCTCTCAT ACCTGCCACT GCCAGTGCTG 241 TTTGGGAAAT AATAAAAAGA ACAGGAATTC AAACATTTGG AAAAAATGTG GTTGTGGCTG 301 GAAGATCCAA GAACGTAGGG ATGCCTATTG CCATGCTTTT ACACACTGAT GGAGAGCATG 361 AACGGCCAGG AGGTGATGCA ACTGTGACAA TAGCTCACAG ATACACCCCC AAAGAGCAAC 421 TGAAGATTCA TACGCAGCTG GCAGATATTA TCATAGTTGC TGCAGAGAGA TTTCACCATT 481 TTGCCCAGGA CCTCTCCAAC TCCTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa 541 agcattgctt atcaatttgt tgcaacgaac