Construct: ORF ccsbBroadEn_14032

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014217.1_s300c1, BRDN0000456788
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
SGSM2 (9905)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9905 SGSM2 small G protein signaling m... NM_014853.3 99.6% 16.9% (many diffs)
2 human 9905 SGSM2 small G protein signaling m... XM_011524106.1 98.5% 16.8% (many diffs)
3 human 9905 SGSM2 small G protein signaling m... XM_011524102.3 95.5% 16.1% (many diffs)
4 human 9905 SGSM2 small G protein signaling m... NM_001098509.2 95.4% 17.6% (many diffs)
5 human 9905 SGSM2 small G protein signaling m... XM_011524103.3 94.9% 16.2% (many diffs)
6 human 9905 SGSM2 small G protein signaling m... XM_011524101.3 94.4% 16% (many diffs)
7 human 9905 SGSM2 small G protein signaling m... XM_011524108.1 94.3% 17.5% (many diffs)
8 human 9905 SGSM2 small G protein signaling m... NM_001346700.2 93% 18% (many diffs)
9 human 9905 SGSM2 small G protein signaling m... XM_011524104.2 92.8% 14.3% (many diffs)
10 human 9905 SGSM2 small G protein signaling m... XM_017025474.2 91.4% 16.8% (many diffs)
11 human 9905 SGSM2 small G protein signaling m... XM_017025475.2 90.8% 16.9% (many diffs)
12 human 9905 SGSM2 small G protein signaling m... XM_011524105.3 90.3% 16.7% (many diffs)
13 human 9905 SGSM2 small G protein signaling m... XM_011524107.3 88.9% 16.9% (many diffs)
14 human 9905 SGSM2 small G protein signaling m... XM_017025476.1 72.9% 5% (many diffs)
15 human 9905 SGSM2 small G protein signaling m... XR_002958096.1 54.4% (many diffs)
16 human 9905 SGSM2 small G protein signaling m... XR_934127.3 51.9% (many diffs)
17 human 9905 SGSM2 small G protein signaling m... XR_934129.3 37.9% (many diffs)
18 mouse 97761 Sgsm2 small G protein signaling m... XM_006534581.3 88.6% 16% (many diffs)
19 mouse 97761 Sgsm2 small G protein signaling m... NM_197943.2 84.4% 16.7% (many diffs)
20 mouse 97761 Sgsm2 small G protein signaling m... XM_006534583.3 80.7% 14% (many diffs)
21 mouse 97761 Sgsm2 small G protein signaling m... XM_006534584.3 78.9% 15.6% (many diffs)
22 mouse 97761 Sgsm2 small G protein signaling m... XM_006534585.3 71.6% 5.1% (many diffs)
23 mouse 97761 Sgsm2 small G protein signaling m... XM_006534587.2 68.2% 5.3% (many diffs)
24 mouse 97761 Sgsm2 small G protein signaling m... XM_006534589.3 57.4% 6.3% (many diffs)
25 mouse 97761 Sgsm2 small G protein signaling m... XM_017314863.1 57.4% 6.3% (many diffs)
26 mouse 97761 Sgsm2 small G protein signaling m... XM_017314864.1 57.4% 6.3% (many diffs)
27 mouse 97761 Sgsm2 small G protein signaling m... XR_388560.3 52.1% (many diffs)
28 mouse 97761 Sgsm2 small G protein signaling m... XR_001780082.1 51.8% (many diffs)
29 mouse 97761 Sgsm2 small G protein signaling m... XR_001780084.1 51.7% (many diffs)
30 mouse 97761 Sgsm2 small G protein signaling m... XR_001780085.1 49.6% (many diffs)
31 mouse 97761 Sgsm2 small G protein signaling m... XR_001780083.1 49.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
618
ORF length:
552
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG CAGCGCAGAG GACGCAGTCA AAGAGAAACT GCTGTGGAAC GTGAAGAAGG
121AGGTGAAGCA AATCATGGAG GAGGCTGTCA CCAGGAAGTT TGTGCATGAA GACAGCAGCC
181ACATCATTGC TTTATGTGGT GCAGTGGAGG CTTGCCTCTT GCATCAGCTG AGACGCCGTG
241CCGCTGGCTT CATGCGCAGT GACAAGATGG CAGCCCTGTT CACCAAGGTG GGGAAGACGT
301GCCCAGTGGC GGGGGAGATT TGCCACAAGG TACAGGAGCT GCAGCAACAA GCAGAGGGCA
361GGAAACCCTC AGGGGTCAGC CAGGAGGCCC TGCGGAGACA GGGCTCAGCC AGCGGGAAGG
421CCCCGGCCCT CAGCCCTCAG GCCTTGAAAC ACGTATGGGT ACGCACGGCG CTCATCGAGA
481AAGTTCTGGA CAAGGTCGTG CAATACCTGG CGGAAAACTG CAGCAAGTAC TACGAGAAGG
541AGGCACTGCT GGCAGACCCT GTGTTCGGCC CGATCCTGGC CTCTCTTCTA GTGGGACCCT
601GGTGCCTTGG AATACACTAA GCTCAAGACA GCCGATCACT ACTGGACTGA CCCCTCTGCT
661GATGAGCTGG TCCAGCGGCA CCGCATCCGG GGTCCACCTA CTCGCCAGGA CTCCCCTGCA
721AAGCGCCCAG CCCTGGGGAT CCGGAAACGG CACTCAAGCG GCAGCGCGTC GGAGGACAAG
781CTGGCTGCCT GCGCCAGCGA GTGTGTGGAG TCCCTGCACC AGAACTCACG GACGCGGCTG
841CTCTATGGCA AGAACCACGT GCTGGTGCAG CCGAAGGAGG ATATGGAGGC GGTCCCTGGC
901TACCTCTCCC TGCACCAGTC TGCAGAGAGC CTGACTCTGA AGTGGACCCC CAACCAGCTC
961ATGAATGGGA CTCTGGGGGA CTCCGAGCTG GAAAAGAGCG TTTACTGGGA CTATGCCCTC
1021GTGGTGCCCT TCAGCCAGGT CGTGTGCATC CGCTGCCACC AGCAAAAGAG CGGTGGCACG
1081CTTGTGCTGG TGAGCCAGGA TGGCATCCAG AGGCCGCCGC TGCATTTCCC ACAGGGAGGA
1141CACCTGCTGT CCTTTCTGTC CTGTCTGGAG AATGGGCTGC TGCCTCAGGG ACAGCTAGAG
1201CCCCCGCTGT GGACCCAGCA AGGGAAGGGG AAAGTGTTCC CCAAGCTACG GAAACGAAGC
1261AGCATTCGCT CCGTGGATAT GGAGGAGATG GGCACGGGGC GGGCCACCGA CTATGTGTTC
1321CGGATCATCT ACCCCGGCCA CAGGCACGAG CACATCACTA TTAACTACCA CCACCTAGCG
1381GCCAGCCGCG CGGCCTCGGT GGACGATGAT GAGGAAGAGG AGGATAAACT GCACGCGATG
1441CTCTCAATGA TCTGCTCGCG GAACCTCACA GCTCCCAATC CGATGAAAGA CGCTGGTGAC
1501ATGATCGAGA TGCAGGGCTT TGGGCCCAGC CTGCCAGCCT GGCACCTGGA GCCCCTGTGC
1561AGTCAGGGCT CCTCCTGCCT CTCCTGCTCC TCCAGCAGCT CCCCACATGC AACCCCCAGC
1621CACTGTAGCT GCATCCCCGA CCGGTTGCCG CTCAGGCTAC TGTGTGAGAG TATGAAGAGG
1681CAGATCGTGT CCCGGGCCTT CTACGGCTGG CTGGCACACT GCCGCCACCT GTCCACGGTG
1741CGGACCCACC TGTCGGCGCT GGTGCACCAT AGCGTTATCC CACCTGACCG GCCCCCGGGG
1801GCCTCCGCGG GCCTCACCAA GGACGTGTGG AGCAAGTATC AGAAGGACAA AAAGAACTAC
1861AAAGAGCTGG AGCTGCTGCG GCAAGTTTAC TACGGAGGCA TAGAGCACGA GATCCGCAAG
1921GACGTCTGGC CCTTTCTGCT TGGCCACTAC AAGTTCGGCA TGAGCAAGAA GGAGATGGAG
1981CAGGTGGACG CAGTGGTGGC AGCAAGGTAC CAGCAGGTGT TGGCAGAGTG GAAGGCCTGC
2041GAGGTGGTGG TGAGGCAGCG GGAGCGGGAG GCCCACCCAG CCACACGCAC CAAGTTCTCC
2101TCAGGCAGCA GCATCGACAG CCACGTGCAG CGCCTCATCC ACCGAGACTC CACCATCAGC
2161AACGATGTGT TTATCTCAGT GGATGATCTG GAACCCCCGG AGCCCCAGGA CCCTGAAGAT
2221TCAAGACCAA AACCTGAGCA GGAAGCAGGA CCCGGGACTC CGGGCACCGC CGTGGTGGAG
2281CAGCAGCATT CCGTGGAGTT CGACTCTCCA GACTCAGGAC TGCCCTCCTC TCGCAATTAC
2341TCCGTGGCCT CGGGCATCCA GTCAAGCCTA GATGAGGGGC AGAGCGTGGG CTTCGAAGAG
2401GAGGACGGCG GTGGGGAGGA AGGCTCCAGT GGGCCCGGCC CTGCAGCTCA CACTTTGAGG
2461GAGCCCCAGG ATCCCAGCCA GGAGAAGCCT CAGGCCGGAG AACTGGAGGC CGGAGAGGAG
2521CTTGCGGCTG TGTGTGCGGC TGCCTACACT ATAGAATTAC TGGATACTGT GGCCTTAAAC
2581CTGCACCGCA TAGACAAGGA TGTGCAGAGG TGTGACCGCA ACTACTGGTA CTTCACGCCC
2641CCCAACCTCG AGAGGCTCAG AGACGTCATG TGCAGCTACG TGTGGGAGCA CCTGGACGTG
2701GGCTATGTGC AGGGCATGTG CGATCTGCTG GCGCCTCTCC TGGTCACCCT CGACAATGAT
2761CAGCTGGCCT ACAGCTGCTT CAGCCACCTC ATGAAGAGGA TGAGCCAGAA CTTCCCCAAC
2821GGGGGTGCCA TGGACACCCA CTTTGCCAAC ATGCGCTCCC TCATCCAGAT CCTGGACTCA
2881GAGCTGTTTG AGCTGATGCA TCAGAATGGA GACTACACCC ACTTCTACTT CTGTTATCGC
2941TGGTTCCTGC TGGATTTTAA GAGAGAACTG CTGTATGAGG ATGTGTTTGC TGTGTGGGAG
3001GTGATCTGGG CAGCCAGGCA CATCTCATCG GAGCACTTTG TCCTGTTCAT CGCCCTCGCC
3061CTGGTGGAGG CCTACCGAGA GATCATCCGT GACAACAACA TGGTCTTCAC TGACATCATC
3121AAGTTTTTCA ATGAACGTGC TGAGCATCAC GATGCCCAGG AGATCCTGCG GATTGCCCGG
3181GACCTCGTCC ACAAGGTGCA GATGCTCATA GAGAACAAGT GCCCAACTTT CTTGTACAAA
3241GTTGGcatta taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)