Construct: ORF ccsbBroadEn_14105
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001915.1_s300c1, BRDN0000457412
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LTN1 (26046)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26046 | LTN1 | listerin E3 ubiquitin prote... | NM_015565.3 | 99.9% | 99.6% | (many diffs) |
| 2 | human | 26046 | LTN1 | listerin E3 ubiquitin prote... | NM_001320766.2 | 99.1% | 98.8% | (many diffs) |
| 3 | human | 26046 | LTN1 | listerin E3 ubiquitin prote... | XM_017028316.2 | 83.5% | 83.2% | (many diffs) |
| 4 | human | 26046 | LTN1 | listerin E3 ubiquitin prote... | XM_017028317.1 | 59.5% | 59% | (many diffs) |
| 5 | human | 26046 | LTN1 | listerin E3 ubiquitin prote... | XM_006723987.4 | 48.1% | 47.6% | (many diffs) |
| 6 | mouse | 78913 | Ltn1 | listerin E3 ubiquitin prote... | NM_001081068.1 | 83.6% | 85.2% | (many diffs) |
| 7 | mouse | 78913 | Ltn1 | listerin E3 ubiquitin prote... | XM_006523111.2 | 50.3% | 51.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 5367
- ORF length:
- 5298
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGCGGGAAG AACAAGCAGC GAACTAAAGG GAACCTGAGG CCTTCAAACA 121 GTGGCCGAGC TGCAGAACTC CTTGCCAAAG AACAGGGAAC AGTGCCTGGA TTTATTGGTT 181 TTGGAACATC TCAGAGTGAC CTAGGCTATG TTCCTGCTAT TCAAGGAGCT GAAGAAATTG 241 ACAGTCTTGT AGATTCTGAT TTCCGAATGG TGCTGCGGAA ACTTTCAAAG AAAGATGTCA 301 CCACAAAATT AAAAGCTATG CAGGAATTTG GAACCATGTG TACAGAGAGA GACACAGAAA 361 CTGTGAAAGG AGTTCTTCCA TATTGGCCAA GAATTTTTTG CAAAATTTCA CTTGATCATG 421 ACCGTCGCGT CCGAGAAGCC ACACAACAAG CTTTTGAAAA ACTTATCCTT AAAGTAAAGA 481 AACAGTTGGC TCCCTACTTA AAAAGTTTAA TGGGATATTG GCTAATGGCT CAGTGTGATA 541 CTTACACACC AGCTGCGTTT GCAGCAAAAG ATGCATTTGA AGCGGCTTTT CCTCCAAGCA 601 AGCAACCTGA AGCCATAGCA TTTTGTAAGG ATGAAATTAC AAGTGTGCTG CAGGATCATC 661 TTATAAAAGA AACACCTGAT ACACTCAGTG ACCCGCAAAC TGTTCCAGAG GAAGAAAGAG 721 AAGCTAAATT CTACCGGGTT GTAACTTGTT CCTTATTGGC ATTAAAGAGA TTACTTTGCC 781 TTTTACCTGA TAATGAGCTT GATTCTCTGG AGGAGAAATT TAAGTCTCTT TTATCACAGA 841 ATAAGTTTTG GAAGTATGGA AAACACAGTG TACCTCAGAT TCGCTCAGCT TATTTTGAGT 901 TAGTCTCTGC ATTGTGCCAG CGCATTCCAC AGTTGATGAA AGAGGAAGCA TCCAAAGTGA 961 GCCCATCAGT TCTACTTAGC ATTGATGACA GTGACCCAAT TGTCTGCCCA GCTCTCTGGG 1021 AAGCTGTACT CTATACACTT ACAACTATTG AGGACTGTTG GCTTCATGTA AATGCAAAAA 1081 AGAGTGTGTT TCCCAAGCTA TCAACTGTGA TTCGTGAAGG TGGTCGGGGT CTAGCTACTG 1141 TCATATATCC TTACCTTCTG CCATTCATCA GCAAGCTCCC TCAGTCCATC ACAAATCCAA 1201 AGTTGGATTT CTTCAAAAAT TTCCTCACGT CTCTAGTTGC TGGGCTGTCA ACAGAGAGAA 1261 CTAAAACCAG CTCTTCAGAG TCCTCGGCAG TAATATCTGC TTTTTTTGAA TGCTTACGTT 1321 TTATAATGCA GCAAAACTTA GGTGAGGAAG AGATTGAACA GATGCTCGTC AATGATCAGT 1381 TGANCCCTTT TATTGATGCA GTTCTCAAAG ACCCAGGATT GCAACATGGG CAGCTATTTA 1441 ACCATTTAGC AGAAACTCTA AGTTCCTGGG AAGCCAAAGC AGACACGGAA AAAGATGAAA 1501 AAACAGCTCA CAACTTGGAG AACGTACTGA TACATTTCTG GGAAAGACTG TCAGAGATCT 1561 GTGTTGCGAA AATCAGTGAG CCAGAAGCTG ATGTTGAGTC CGTTTTGGGT GTATCTAACC 1621 TATTACAGGT GCTTCAGAAG CCGAAGAGCT CATTGAAGTC AAGTaAAAAA AAAAATNGTA 1681 AGGTTAGATT TGCTGATGAG ATACTTGAAA GCAATAAAGA GAATGAAAAA TGTGTATCTT 1741 CAGAAGGAGA GAAGATTGAA GGCTGGGAAT TAACAACTGA ACCTTCTCTC ACTCATAATT 1801 CTTCAGGCCT TTTGTCTCCT CTAAGGAAAA AACCTTTGGA AGACTTAGTC TGTAAACTCG 1861 CAGATATAAG TATTAATTAT GTCAATGAAC GAAAGTCAGA GCAACATCTA AGGTTTCTTT 1921 CTACTCTGCT TGACTCCTTT TCTTCAAGCC GAGTATTTAA AATGCTACTT GGTGATGAAA 1981 AACAGAGTAT TGTCCAAGCC AAACCTCTTG AAATAGCCAA GCTTGTACAA AAAAATCCTG 2041 CGGTGCAGTT TTTATACCAG AAACTGATAG GTTGGCTAAA TGAAGATCAA AGGAAGGATT 2101 TTGGTTTCCT GGTGGACATT TTGTACAGTG CTCTCCGGTG CTGTGACAAT GATATGGAAA 2161 GAAAAAAAGT CTTGGATGAT CTAACCAAGG TGGACTTGAA ATGGAATTCT CTTCTTAAGA 2221 TTATTGAAAA GGCATGTCCT AGTTCAGATA AACATGCTTT AGTAACTCCT TGGCTCAAAG 2281 GCGATATCCT TGGTGAGAAA TTGGTCAACT TGGCAGATTG TCTTTGTAAT GAGGACTTGG 2341 AATCCAGGGT ATCTTCAGAA TCTCACTTCT CAGAAAGATG GACTCTTCTA AGCTTGGTAT 2401 TATCCCAACA TGTTAAAAAT GATTACTTGA TTGGAGACGT ATATGTTGAA AGAATCATTG 2461 TTAGACTTCA TGAAACTTTA TTCAAAACAA AGAAATTATC AGAAGCTGAA AGCAGTGACT 2521 CATCAGTGTC TTTTATCTGT GATGTGGCCT ATAACTATTT CAGCTCAGCG AAAGGATGCT 2581 TGCTAATGCC ATCATCTGAA GATTTATTAT TAACTCTCTT TCAGTTATGT GCTCAGAGCA 2641 AAGAAAAAAC ACATTTGCCA GATTTTCTTA TCTGTAAACT GAAAAATACT TGGCTCTCTG 2701 GTGTAAATTT ATTGGTTCAT CAAACTGACA GTTCATATAA AGAGAGTACC TTCCTACATT 2761 TGTCTGCTCT GTGGCTGAAG AACCAAGTTC AGGCTTCATC TTTGGATATC AACAGTCTCC 2821 AAGTCCTCTT GTCTGCTGTT GATGATTTGC TAAATACACT TCTAGAGAGT GAAGATTCTT 2881 ATCTTATGGG AGTTTATATT GGAAGTGTAA TGCCGAACGA CAGTGAATGG GAAAAGATGA 2941 GGCAGTCTCT TCCTATGCAG TGGTTACATA GACCTCTTTT AGAGGGAAGA TTGAGTTTGA 3001 ATTATGAATG TTTCAAAACA GATTTTAAGG AACAGGACAT AAAGACACTT CCCAGCCATT 3061 TGTGTACTTC AGCATTATTG AGCAAAATGG TCTTAATTGC ACTGAGAAAG GAAACAGTCT 3121 TAGAAAATAA TGAGCTTGAG AAAATAATTG CAGAACTGCT TTATTCACTG CAGTGGTGTG 3181 AAGAATTAGA TAACCCACCT ATTTTTCTAA TTGGATTTTG TGAAATACTT CAAAAAATGA 3241 ATATTACGTA TGATAACTTA CGTGTACTTG GTAATACGTC GGGCCTTTTG CAGCTGTTAT 3301 TTAACAGGTC CAGAGAACAT GGCACACTGT GGTCTCTTAT TATTGCTAAG TTGATCCTTT 3361 CCCGAAGCAT TTCATCTGAT GAAGTAAAAC CACATTATAA GAGAAAAGAA AGTTTTTTTC 3421 CACTAACTGA AGGCAATTTG CATACCATTC AAAGTCTATG TCCATTTTTG TCAAAAGAAG 3481 AAAAGAAAGA ATTTAGTGCT CAATGTATAC CTGCTCTTTT GGGCTGGACT AAGAAAGATC 3541 TTTGCAGCAC TAATGGAGGT TTTGGACATC TTGCCATTTT CAATTCTTGT CTGCAAACCA 3601 AAAGTATAGA TGATGGAGAG CTATTACATG GAATATTAAA AATCATAATA TCCTGGAAGA 3661 AAGAGCATGA AGATATTTTT CTTTTCAGTT GTAATCTATC AGAAGCAAGT CCAGAGGTAC 3721 TGGGTGTAAA TATAGAAATA ATCCGGTTTC TTTCCCTATT TCTGAAATAC TGCTCATCCC 3781 CTTTGGCAGA GAGTGAGTGG GACTTCATCA TGTGCTCCAT GTTGGCTTGG TTGGAGACAA 3841 CAAGTGAGAA TCAGGCATTG TATTCTATTC CACTTGTGCA ACTGTTTGCC TGTGTCAGCC 3901 GTGATTTGGC CTGTGACCTC AGTGCTTTCT TTGATTCCAC AACTCTGGAT ACCATTGGCA 3961 ATCTTCCTGT AAATCTAATC AGTGAATGGA AAGAATTTTT TTCCCAAGGC ATCCACAGTT 4021 TGCTTTTACC TATTTTGGTG ACTGTTACAG GAGAAAACAA AGATGTGTCT GAAACATCCT 4081 TTCAGAATGC AATGCTGAAA CCCATGTGTG AAACATTAAC GTATATCTCA AAGGAACAGC 4141 TATTGAGTCA CAAACTTCCT GCAAGATTAG TTGCTGACCA AAAAACAAAC TTACCAGAAT 4201 ATCTCCAGAC TTTGTTAAAT ACATTGGCCC CATTACTCCT CTTCAGAGCT AGGCCTGTGC 4261 AAATTGCTGT TTATCATATG CTATACAAAT TGATGCCTGA ATTACCACAG TATGATCAGG 4321 ATAATCTAAA GTCATACGGA GATGAAGAAG AAGAGCCAGC CTTGTCACCA CCAGCAGCAC 4381 TGATGTCTCT TCTTAGCATT CAAGAGGACT TACTAGAAAA TGTTTTGGGG TGTATTCCTG 4441 TTGGACAGAT AGTTACTATT AAACCACTGA GTGAAGACTT CTGTTATGTT CTGGGATACC 4501 TTCTCACTTG GAAATTAATA CTAACTTTCT TCAAAGCTGC ATCATCACAG CTTCGGGCTT 4561 TGTATTCCAT GTATCTTCGG AAAACAAAGA GTTTGAATAA ATTGCTCTAT CACCTGTTCA 4621 GGCTTATGCC AGAAAATCCA ACCTATGCAG AGACAGCAGT TGAGGTCCCA AATAAGGACC 4681 CTAAAACATT CTTTACTGAG GAGCTCCAGC TGAGTATTAG AGAAACAACA ATGCTTCCAT 4741 ACCACATTCC ACACTTGGCT TGTTCAGTCT ATCATATGAC ATTAAAAGAC TTGCCTGCCA 4801 TGGTTAGGTT GTGGTGGAAT AGCAGTGAGA AGCGTGTTTT CAATATTGTG GATAGATTTA 4861 CAAGCAAGTA TGTCAGCAGT GTTCTTTCTT TTCAAGAAAT ATCTTCTGTA CAAACAAGTA 4921 CACAACTATT TAATGGCATG ACGGTTAAAG CTCGAGCTAC TACTCGAGAG GTAATGGCTA 4981 CTTATACTAT TGAGGACATA GTTATTGAAC TTATAATACA ACTGCCTTCA AATTATCCAC 5041 TGGGTTCAAT AATAGTAGAA AGTGGGAAAA GAGTAGGAGT AGCTGTTCAG CAGTGGCGGA 5101 ACTGGATGCT GCAGTTAAGC ACTTACCTCA CCCATCAGAA TGGAAGTATT ATGGAAGGCT 5161 TAGCTTTATG GAAAAATAAC GTAGACAAAC GTTTTGAGGG TGTTGAAGAT TGCATGATCT 5221 GTTTCTCAGT CATTCACGGT TTCAACTATT CCCTTCCCAA AAAAGCCTGT AGAACATGCA 5281 AGAAAAAATT CCATTCAGCC TGCTTGTACA AATGGTTTAC ATCTAGCAAC AAATCCACTT 5341 GTCCACTGTG TCGTGAACGT TTTTCTTGCC AACTTTCTTG TACAAAGTTG Gcattataag 5401 aaagcattgc ttatcaattt gttgcaacga ac