Construct: ORF ccsbBroadEn_14311

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003904.1_s300c1, BRDN0000456725
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
CCDC62 (84660)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84660 CCDC62 coiled-coil domain containi... NM_201435.5 99.6% 12.7% (many diffs)
2 human 84660 CCDC62 coiled-coil domain containi... XM_006719643.2 99.6% 12.7% (many diffs)
3 human 84660 CCDC62 coiled-coil domain containi... XM_011538856.2 99.5% 12.7% (many diffs)
4 human 84660 CCDC62 coiled-coil domain containi... XM_006719644.2 97.7% 12.7% (many diffs)
5 human 84660 CCDC62 coiled-coil domain containi... XM_017020033.2 94.6% 13.3% (many diffs)
6 human 84660 CCDC62 coiled-coil domain containi... XM_011538857.2 92.3% 13.7% (many diffs)
7 human 84660 CCDC62 coiled-coil domain containi... NR_027918.3 83.1% (many diffs)
8 human 84660 CCDC62 coiled-coil domain containi... XR_001748904.2 80.8% (many diffs)
9 human 84660 CCDC62 coiled-coil domain containi... XR_944784.2 80.7% (many diffs)
10 human 84660 CCDC62 coiled-coil domain containi... XM_011538859.2 54.4% 7.4% 0_1ins933;248C>A
11 mouse 208908 Ccdc62 coiled-coil domain containi... NM_001134767.1 72.4% 11.1% (many diffs)
12 mouse 208908 Ccdc62 coiled-coil domain containi... XM_006530255.3 72.4% 11.1% (many diffs)
13 mouse 208908 Ccdc62 coiled-coil domain containi... XM_006530256.3 71.3% 11.1% (many diffs)
14 mouse 208908 Ccdc62 coiled-coil domain containi... XM_006530257.3 70.4% 11.4% (many diffs)
15 mouse 208908 Ccdc62 coiled-coil domain containi... XM_006530258.3 68.6% 11.6% (many diffs)
16 mouse 208908 Ccdc62 coiled-coil domain containi... XM_006530259.3 68.5% 11.6% (many diffs)
17 mouse 208908 Ccdc62 coiled-coil domain containi... XM_006530260.3 68.2% 11.7% (many diffs)
18 mouse 208908 Ccdc62 coiled-coil domain containi... XM_017320780.1 68.2% 11.7% (many diffs)
19 mouse 208908 Ccdc62 coiled-coil domain containi... XM_006530261.3 66.6% 11.9% (many diffs)
20 mouse 208908 Ccdc62 coiled-coil domain containi... XM_006530265.3 35.4% 22.2% (many diffs)
21 mouse 208908 Ccdc62 coiled-coil domain containi... XM_006530266.3 34.8% 22.3% (many diffs)
22 mouse 208908 Ccdc62 coiled-coil domain containi... XM_006530268.2 34.2% 22.4% (many diffs)
23 mouse 208908 Ccdc62 coiled-coil domain containi... XM_006530269.2 34.2% 22.4% (many diffs)
24 mouse 208908 Ccdc62 coiled-coil domain containi... XM_006530273.2 33.6% 23.2% (many diffs)
25 mouse 208908 Ccdc62 coiled-coil domain containi... XM_006530274.2 33.6% 23.2% (many diffs)
26 mouse 208908 Ccdc62 coiled-coil domain containi... XM_006530271.3 33.5% 23.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
327
ORF length:
261
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA CCCTCCGGCA GCCTTCCTTG CCGGGCGCCA GAACATCGGG TCAGAAGTTG
121AGATTTCCAC TATCGAGAAA CAACGGAAGG AGCTGCAGTT GCTCATTGGA GAATTAAAAG
181ATCGAGATAA AGAGCTCAAT GACATGGTTG CAGTGCACCA GCAACAGCTT CTTTCATGGG
241AAGAGGATCG GCAGAAAGTG TTGACACTGG AAGAACGTTG CAGCAAATTA GAAGGTGAAC
301TACATAAAAG AACTGAAATA ATCAGGTAGA CTCCAAGAAG GTAAAAGCTC TTGAATCACA
361ATCAAATGGA ATGCCAAACA GCTCTCCAAA AGACCCAACT ACAGCTTCAG GAAATGGCTC
421AAAAGGCAAC GCATTCTTCT CTTCTCTCTG AAGACCTTGA GGCTAGAAAC GAAACTCTCA
481GCAACACGTT AGTGGAACTT TCTGCCCAGG TAGGACAGCT ACAAGCTCGA GAACAAGCTC
541TTACGACAAT GATAAAGCTA AAGGACAAAG ATATTATTGA GGCAGTTAAT CACATTGCAG
601ATTGTTCGGG TAAATTTAAA ATGCTAGAGC ATGCCCTACG TGATGCCAAG ATGGCGGAGA
661CTTGTATTGT GAAAGAAAAG CAAGATTATA AGCAGAAATT GAAGGCACTT AAGATTGAAG
721TCAACAAACT AAAAGAGGAC CTCAATGAAA AGACGACAGA AAATAATGAG CAACGAGAAG
781AGATCATTCG CCTCAAGCAA GAGAAAAGTT GCCTGCACGA TGAATTGCTT TTTACTGTAG
841AGAGAGAAAA GAGGAAAGAT GAATTGCTTA ATATTGCGAA GTCAAAGCAA GAACGCACAA
901ATTCAGAACT GCACAATCTG AGACAGATTT ATGTAAAACA ACAGAGTGAT CTGCAGTTTC
961TTAATTTCAA TGTGGAAAAT TCTCAGGAAT TAATACAGAT GTATGACTCA AAGATGGAGG
1021AATCAAAGGC TCTGGACTCC AGCAGAGACA TGTGTTTATC AGACCTTGAA AATAACCACC
1081CAAAAGTCGA TATTAAGAGG GAAAAAAATC AGAAGTCACT GTTTAAGGAC CAGAAATTTG
1141AAGCCATGTT GGTTCAGCAA AATAGGTCAG ACAAGAGCTC TTGCGATGAA TGCAAAGAGA
1201AGAAACAACA GATCGATACT GTGTTTGGGG AGAAAAGTGT AATTAAGCTG TCATCCATAT
1261TCACCAAAGA CTTAGTAGAG AAACACAACC TCCCTTGGTC TCTGGGAGGA AAAACCCAGA
1321TTGAACCCGA AAACAAAATT ACATTGTGCA AGATCCACAC AAAATCACCA AAATGTCATG
1381GCACTGGGGT TCAGAACGAA GGAAAACAAC CCTCAGAAAC ACCCACTTTA TCTGATGAGA
1441AGCAGTGGCA TGATGTCAGT GTTTACCTGG GCCTGACCAA CTGTCCAAGT TCAAAACATC
1501CAGAAAAGCT GGATGTAGAA TGTCAAGATC AGATGGAAAG GTCCGAAATC TCATGCTGCC
1561AGAAAAATGA AGCCTGTCTG GGCGAAAGTG GCATGTGTGA CTCCAAGTGC TGCCACCCGA
1621GTAACTTCAT AATTGAAGCC CCAGGCCACA TGTCTGACGT GGAGTGGATG AGTATTTTCA
1681AGCCTTCCAA AATGCAGAGA ATTGTCCGCC TCAAATCTGG GTGCACCTGT TCAGAAAGCA
1741TCTGTGGCAC ACAACATGAC TCCCCGGCAA GTGAGCTAAT TGCCATCCAA GATTCCCACT
1801CTTTGGGTTC TTCAAAATCT GCCTTGAGAG AAGATGAGAC GGAGTCCTCT TCCAATAAAA
1861AGAACTCACC TACGAGTTTG TTAATCTACA AAGATGCACC AGCATTCAAT GAAAAGGCTT
1921CAATTGTGTT ACCCTCCCAG GATGATTTCT CGCCCACGAG CAAGCTCCAG CGTTTGCTGG
1981CGGAATCTCG TCAGATGGTG ACGGACCTGG AGCTGAGCAC ACTGCTGCCC ATCAGCCATG
2041AGAATCTCAC TGGCAGTGCC ACAAATAAGT CAGAGGTCCC AGAAGAGTCA GCTCAAAAAA
2101ATACCTTTGT CAGTTATTGC CCAACTTTCT TGTACAAAGT TGGcattata agaaagcatt
2161gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)