Construct: ORF ccsbBroadEn_14334
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014128.1_s300c1, BRDN0000388248
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MLIP (90523)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 90523 | MLIP | muscular LMNA interacting p... | XM_024446582.1 | 77.7% | 72.9% | (many diffs) |
| 2 | human | 90523 | MLIP | muscular LMNA interacting p... | XM_017011470.1 | 57.9% | 57.4% | (many diffs) |
| 3 | human | 90523 | MLIP | muscular LMNA interacting p... | XM_024446581.1 | 56.8% | 54.6% | (many diffs) |
| 4 | human | 90523 | MLIP | muscular LMNA interacting p... | XM_024446580.1 | 56% | 52.9% | (many diffs) |
| 5 | human | 90523 | MLIP | muscular LMNA interacting p... | XM_024446579.1 | 53.4% | 50.5% | (many diffs) |
| 6 | human | 90523 | MLIP | muscular LMNA interacting p... | NM_138569.2 | 50.2% | 47.5% | (many diffs) |
| 7 | human | 90523 | MLIP | muscular LMNA interacting p... | XM_005249480.5 | 49.8% | 47.1% | (many diffs) |
| 8 | human | 90523 | MLIP | muscular LMNA interacting p... | XM_017011468.1 | 26.2% | 25% | (many diffs) |
| 9 | human | 90523 | MLIP | muscular LMNA interacting p... | XM_017011467.1 | 24.8% | 23.6% | (many diffs) |
| 10 | human | 90523 | MLIP | muscular LMNA interacting p... | XM_005249478.5 | 24.7% | 23.7% | (many diffs) |
| 11 | human | 90523 | MLIP | muscular LMNA interacting p... | XM_017011466.2 | 24.3% | 23.2% | (many diffs) |
| 12 | human | 90523 | MLIP | muscular LMNA interacting p... | XM_017011465.1 | 24.2% | 23% | (many diffs) |
| 13 | human | 90523 | MLIP | muscular LMNA interacting p... | XM_005249476.5 | 23.3% | 22.1% | (many diffs) |
| 14 | human | 90523 | MLIP | muscular LMNA interacting p... | NM_001281747.2 | 23.1% | 22.1% | (many diffs) |
| 15 | human | 90523 | MLIP | muscular LMNA interacting p... | XM_006715245.3 | 23% | 21.9% | (many diffs) |
| 16 | human | 90523 | MLIP | muscular LMNA interacting p... | NM_001281746.2 | 22.2% | 22% | (many diffs) |
| 17 | human | 90523 | MLIP | muscular LMNA interacting p... | XM_017011469.1 | 20.3% | 20.1% | (many diffs) |
| 18 | human | 90523 | MLIP | muscular LMNA interacting p... | XM_024446578.1 | 19.3% | 18.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 768
- ORF length:
- 702
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTG CAGCTGGTAC CTTGGATTTG AATGTTCTTC TAAATCCAAT GACTACTTGA 121 CCTTGAATGC TGGGAGCCAA CAAGAGAGAG ACCAAGCGAA ATTGACTTGT CCTTCAGAGG 181 TCAGTGGAAC GATTTTACAA GAAAGGGAAT TCGAAGCAAA CAAACTTCAA GGGATGCAGC 241 AAAGTGACCT CTTCAAAGCT GAATATGTCC TTATTGTGGA CTCCGAAGGG GAAGATGAGG 301 CTGCAAGCAG AAAAGTTGAA CAAGGCCCCC CAGGGGGGAT TGGCACCGCA GCTATCCGGC 361 CCAAGTCTCT AGCTATCTCG TCCAGTCTGG TCTCTGATGT AGTGCGTCCC AAAACACAGG 421 GGACTGATCT CAAGACCTCA TCACATCCTG AAATGCTTCA TGGGATGGCC CCTCAGCAAA 481 AGCATGGGCA GACTCCTACA ACTCTTCCAA GAGCAGCTGG TCGAGAAACC AAATATGCAA 541 ATCTCTCCTC ACCAACTTCT ACAGTATCTG AGAGTCAGCT GACTAAGCCT GGAGTAATTC 601 GCCCAGTACC TGTAAAATCC AGAATATTAC TGAAAAAAGA GGAGGAAGTC TATGAACCCA 661 ACCCTTTCAG TAAATACTTG GAAGATAACA GCGACCTCTT TTCTGAACAG CTGAGTCATC 721 CAATGGTGGC TATTCCTGAA CATGAAGCTC TTGATTCCAA AGAGCAATGC CCAACTTTCT 781 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac