Transcript: Human XM_006715245.3

PREDICTED: Homo sapiens muscular LMNA interacting protein (MLIP), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MLIP (90523)
Length:
7457
CDS:
173..3160

Additional Resources:

NCBI RefSeq record:
XM_006715245.3
NBCI Gene record:
MLIP (90523)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006715245.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000418788 GTCATCCAATGGTGGCTATTC pLKO_005 3099 CDS 100% 10.800 15.120 N MLIP n/a
2 TRCN0000136123 GAAGATAACAGCGACCTCTTT pLKO.1 2861 CDS 100% 4.950 6.930 N MLIP n/a
3 TRCN0000167535 GCTACCATTGATAAGGTCTTA pLKO.1 2573 CDS 100% 4.950 6.930 N MLIP n/a
4 TRCN0000423763 TGTCTCGCTCCATCCTTTATA pLKO_005 2914 CDS 100% 15.000 10.500 N MLIP n/a
5 TRCN0000425898 AGAGAGAGACCAAGCGAAATT pLKO_005 469 CDS 100% 13.200 9.240 N MLIP n/a
6 TRCN0000430897 GAAACTGTAAATAGGTCTAAA pLKO_005 410 CDS 100% 13.200 9.240 N MLIP n/a
7 TRCN0000341594 TGACTAAGCCTGGAGTAATTC pLKO_005 2760 CDS 100% 13.200 9.240 N Mlip n/a
8 TRCN0000137348 GCCAAACCTCTGATCTTCACA pLKO.1 290 CDS 100% 3.000 2.100 N MLIP n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006715245.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14334 pDONR223 100% 23% 21.9% None (many diffs) n/a
2 ccsbBroad304_14334 pLX_304 0% 23% 21.9% V5 (many diffs) n/a
3 TRCN0000472297 TCATACACCCCACCGAACTATCCG pLX_317 62% 23% 21.9% V5 (many diffs) n/a
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