Construct: ORF ccsbBroadEn_14524

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006541.1_s300c1, BRDN0000391052
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4141 MARS1 methionyl-tRNA synthetase 1 XR_001748704.2 63.7% (many diffs)
2 human 10677 AVIL advillin NM_006576.3 45.9% 43.5% (many diffs)
3 human 10677 AVIL advillin XM_017018710.2 45.9% 43.5% (many diffs)
4 human 10677 AVIL advillin XM_017018711.2 44.9% 43.6% (many diffs)
5 human 10677 AVIL advillin XM_017018712.2 44.9% 43.6% (many diffs)
6 human 10677 AVIL advillin XM_017018713.2 44.9% 43.6% (many diffs)
7 human 10677 AVIL advillin XM_024448800.1 44.9% 43.6% (many diffs)
8 human 10677 AVIL advillin XM_017018714.2 22.2% 20.4% (many diffs)
9 human 10677 AVIL advillin XM_017018715.2 21.1% 19.8% (many diffs)
10 mouse 11567 Avil advillin XM_006513102.2 42.7% 40.3% (many diffs)
11 mouse 11567 Avil advillin XM_006513097.3 41.8% 39.4% (many diffs)
12 mouse 11567 Avil advillin XM_006513098.3 41.8% 39.4% (many diffs)
13 mouse 11567 Avil advillin NM_009635.3 41% 40.2% (many diffs)
14 mouse 11567 Avil advillin XM_006513099.3 40.2% 39.3% (many diffs)
15 mouse 11567 Avil advillin XM_006513100.3 40.2% 39.3% (many diffs)
16 mouse 11567 Avil advillin XM_006513101.2 40.2% 39.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3054
ORF length:
2988
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG ACTGTTCGTG AGTGATGGCG TCCCGGGTTG CTTGCCGGTG CTGGCCGCCG
121CCGGGAGAGC CCGGGGCAGA GCAGAGGTGC TCATCAGCAC TGTAGGCCCG GAAGATTGTG
181TGGTCCCGTT CCTGACCCGG CCTAAGGTCC CTGTCTTGCA GCTGGATAGC GGCAACTACC
241TCTTCTCCAC TAGTGCAATC TGCCGATATT TTTTTTTGTT ATCTGGCTGG GAGCAAGATG
301ACCTCACTAA CCAGTGGCTG GAATGGGAAG CGACAGAGCT GCAGCCAGCT TTGTCTGCTG
361CCCTGTACTA TTTAGTGGTC CAAGGCAAGA AGGGGGAAGA TGTTCTTGGT TCAGTGCGGA
421GAGCCCTGAC TCACATTGAC CACAGCTTGA GTCGTCAGAA CTGTCCTTTC CTGGCTGGGG
481AGACAGAATC TCTAGCCGAC ATTGTTTTGT GGGGAGCCCT ATACCCATTA CTGCAAGATC
541CCGCCTACCT CCCTGAGGAG CTGAGTGCCC TGCACAGCTG GTTCCAGACA CTGAGTACCC
601AGGAACCATG TCAGCGAGCT GCAGAGACTG TACTGAAACA GCAAGGTGTC CTGGCTCTCC
661GGCCTTACCT CCAAAAGCAG CCCCAGCCCA GCCCCGCTGA GGGAAGGGCT GTCACCAATG
721AGCCTGAGGA GGAGGAGCTG GCTACCCTAT CTGAGGAGGA GATTGCTATG GCTGTTACTG
781CTTGGGAGAA GGGCCTAGAA AGTTTGCCCC CGCTGCGGCC CCAGCAGAAT CCAGTGTTGC
841CTGTGGCTGG AGAAAGGAAT GTGCTCATCA CCAGTGCCCT CCCTTACGTC AACAATGTCC
901CCCACCTTGG GAACATCATT GGTTGTGTGC TCAGTGCCGA TGTCTTTGCC AGGTACTCTC
961GCCTCCGCCA GTGGAACACC CTCTATCTGT GTGGGACAGA TGAGTATGGT ACAGCAACAG
1021AGACCAAGGC TCTGGAGGAG GGACTAACCC CCCAGGAGAT CTGCGACAAG TACCACATCA
1081TCCATGCTGA CATCTACCGC TGGTTTAACA TTTCGTTTGA TATTTTTGGT CGCACCACCA
1141CTCCACAGCA GACCAAAATC ACCCAGGACA TTTTCCAGCA GTTGCTGAAA CGAGGTTTTG
1201TGCTGCAAGA TACTGTGGAG CAACTGCGAT GTGAGCACTG TGCTCGCTTC CTGGCTGACC
1261GCTTCGTGGA GGGCGTGTGT CCCTTCTGTG GCTATGAGGA GGCTCGGGGT GACCAGTGTG
1321ACAAGTGTGG CAAGCTCATC AATGCTGTCG AGCTTAAGAA AATGGAGCTG GCGCTGGTGC
1381CTGTGAGCGC CCACGGCAAC TTCTATGAGG GGGACTGCTA CGTCATCCTC TCGACCCGGA
1441GAGTGGCCAG TCTCCTATCC CAGGACATCC ACTTCTGGAT CGGGAAGGAC TCCTCCCAGG
1501ATGAGCAAAG CTGCGCAGCC ATATATACCA CACAGCTGGA CGACTACCTG GGAGGCAGCC
1561CTGTGCAGCA CCGAGAGGTC CAGTACCATG AGTCAGACAC TTTCCGTGGC TACTTCAAGC
1621AGGGCATCAT CTACAAGCAG GGGGGTGTCG CCTCTGGGAT GAAGCACGTG GAGACCAATA
1681CCTACGACGT GAAGCGGCTG CTACATGTGA AAGGGAAAAG AAACATCAGG GCTACCGAGG
1741TGGAAATGAG CTGGGACAGT TTCAACCGAG GTGATGTCTT CTTGCTGGAC CTTGGGAAAG
1801TCATCATCCA ATGGAATGGC CCAGAGAGCA ACAGTGGGGA GCGCCTGAAG GCTATGCTTC
1861TGGCAAAGGA TATTCGAGAC AGGGAGCGAG GGGGCCGTGC TGAAATAGGA GTGATCGAGG
1921GAGACAAGGA GGCAGCCAGC CCAGAGCTGA TGAAGGTCCT TCAGGACACC CTTGGCCGAC
1981GCTCCATTAT CAAGCCTACA GTCCCTGATG AGATCATAGA TCAGAAGCAG AAATCAACTA
2041TCATGTTGTA TCATATCTCA GATTCAGCTG GGCAGCTGGC AGTCACAGAG GTAGCAACAA
2101GGCCTCTGGT CCAGGACTTA CTGAACCATG ATGACTGCTA CATCCTGGAC CAAAGTGGAA
2161CCAAAATCTA CGTGTGGAAA GGAAAAGGAG CCACAAAGGC TGAAAAACAG GCAGCCATGT
2221CTAAAGCGCT GGGCTTCATC AAGATGAAGA GCTACCCCAG CAGCACCAAT GTGGAGACCG
2281TCAACGATGG TGCTGAGTCG GCCATGTTCA AGCAGCTGTT CCAGAAGTGG TCAGTAAAGG
2341ACCAGACCAT GGGCCTGGGG AAAACGTTCA GCATTGGTAA AATTGCTAAA GTTTTCCAGG
2401ATAAATTTGA TGTGACTCTG CTACACACCA AGCCAGAGGT AGCTGCCCAG GAAAGAATGG
2461TCGATGATGG CAACGGAAAA GTTGAGGTCT GGAGAATTGA GAACCTGGAG CTGGTCCCTG
2521TGGAGTATCA ATGGTATGGC TTCTTTTATG GGGGAGACTG TTATCTGGTC CTCTACACAT
2581ACGAGGTAAA TGGGAAGCCA CATCACATCT TGTACATCTG GCAGGGCCGC CACGCCTCAC
2641AGGATGAGCT GGCAGCCTCA GCATACCAGG CAGTGGAGGT GGATCGGCAG TTTGATGGGG
2701CTGCTGTGCA GGTTCGAGTC AGGATGGGAA CGGAGCCACG CCACTTCATG GCCATCTTCA
2761AAGGGAAGCT AGTTATCTTT GAGGGTGGGA CTTCCAGGAA GGGAAATGCC GAGCCTGACC
2821CTCCAGTAAG ACTCTTCCAA ATTCATGGAA ATGACAAATC TAACACCAAA GCAGTGGAAG
2881TTCCAGCCTT TGCCTCCTCC CTAAACTCCA ATGATGTCTT TCTGCTGCGA ACTCAGGCAG
2941AGCACTACCT GTGGTATGGC AAGGTAGGAT GGCTGGGCCC CGGGTCAGAC CAGCCCCTCG
3001GAGCCCAGAC CTGCACTCCC CTCCTCCTGT CAGCAAGGTC AAANGACCTA GAGTACCCAA
3061CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)