Construct: ORF ccsbBroadEn_14618
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005236.1_s300c1, BRDN0000395233
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DPP6 (1804)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1804 | DPP6 | dipeptidyl peptidase like 6 | NM_001039350.3 | 99.6% | 99.7% | (many diffs) |
| 2 | human | 1804 | DPP6 | dipeptidyl peptidase like 6 | NM_001364497.2 | 98.5% | 97.1% | (many diffs) |
| 3 | human | 1804 | DPP6 | dipeptidyl peptidase like 6 | NM_001364498.2 | 98.5% | 97.1% | (many diffs) |
| 4 | human | 1804 | DPP6 | dipeptidyl peptidase like 6 | NM_001364499.2 | 98.5% | 97.1% | (many diffs) |
| 5 | human | 1804 | DPP6 | dipeptidyl peptidase like 6 | NM_001364500.2 | 98.5% | 97.1% | (many diffs) |
| 6 | human | 1804 | DPP6 | dipeptidyl peptidase like 6 | NM_001936.5 | 97.9% | 97.1% | (many diffs) |
| 7 | human | 1804 | DPP6 | dipeptidyl peptidase like 6 | NM_001290252.2 | 92.4% | 91.5% | (many diffs) |
| 8 | human | 1804 | DPP6 | dipeptidyl peptidase like 6 | NM_130797.4 | 91% | 90.4% | (many diffs) |
| 9 | human | 1804 | DPP6 | dipeptidyl peptidase like 6 | XM_017011812.2 | 81.6% | 81.6% | (many diffs) |
| 10 | human | 1804 | DPP6 | dipeptidyl peptidase like 6 | NR_157196.2 | 52.1% | (many diffs) | |
| 11 | human | 1804 | DPP6 | dipeptidyl peptidase like 6 | NM_001364501.1 | 51.3% | 47% | (many diffs) |
| 12 | human | 1804 | DPP6 | dipeptidyl peptidase like 6 | NR_157195.1 | 47.9% | (many diffs) | |
| 13 | human | 1804 | DPP6 | dipeptidyl peptidase like 6 | NM_001364502.2 | 17.2% | 16.3% | (many diffs) |
| 14 | mouse | 13483 | Dpp6 | dipeptidylpeptidase 6 | NM_001198886.1 | 85% | 92.7% | (many diffs) |
| 15 | mouse | 13483 | Dpp6 | dipeptidylpeptidase 6 | NM_010075.2 | 84% | 90.3% | (many diffs) |
| 16 | mouse | 13483 | Dpp6 | dipeptidylpeptidase 6 | NM_001136060.2 | 83.8% | 90.2% | (many diffs) |
| 17 | mouse | 13483 | Dpp6 | dipeptidylpeptidase 6 | NM_207282.3 | 78.4% | 83.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2472
- ORF length:
- 2403
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAAGGAAAAG GCCATGATCA AGACCGCTAA GATGCAGGGG AACGTGATGG 121 AGCTGGTGGG GAGTAACCCT CCGCAGAGGA ATTGGAAAGG AATAGCAATT GCACTGCTTG 181 TCATTCTGGT CATCTGCTCC TTGATCGTCA CCTCGGTCAT ACTTCTGACA CCAGCGGAAG 241 ATAATAGTCT GTCTCAAAAG AAGAAGGTCA CTGTAGAAGA TCTCTTCAGT GAAGACTTCA 301 AAATTCATGA CCCCGAGGCT AAGTGGATAA GTGATACAGA ATTCATCTAC AGAGAACAGA 361 AAGGAACAGT GAGACTGTGG AATGTTGAAA CAAATACTTC TACTGTCTTA ATAGAAGGCA 421 AAAAAATTGA ATCATTAAGA GCCATCAGAT ATGAAATATC TCCAGATAGA GAGTATGCAC 481 TTTTTTCATA CAATGTGGAA CCCATATATC AACACTCGTA TACTGGATAT TATGTCCTGA 541 GCAAAATTCC TCATGGGGAT CCTCAAAGTC TGGACCCACC AGAAGTCAGC AATGCAAAGC 601 TTCAGTATGC AGGATGGGGC CCTAAAGGCC AACAGCTGAT ATTTATTTTT GAAAACAATA 661 TCTACTACTG TGCACATGTC GGGAAACAGG CCATCCGTGT GGTCTCCACT GGCAAGGAAG 721 GTGTGATTTA CAATGGCCTC AGTGACTGGC TGTATGAAGA GGAGATTTTG AAGACACACA 781 TCGCACACTG GTGGTCTCCG GATGGCACGA GACTCGCCTA CGCCGCCATC AATGATTCCC 841 GTGTCCCCAT CATGGAGCTC CCAACTTACA CCGGCTCCAT CTACCCCACC GTGAAGCCCT 901 ACCACTATCC CAAGGCTGGA AGTGAGAACC CCAGCATTTC CCTACACGTT ATTGGCTTAA 961 ATGGACCCAC CCATGATCTG GAGATGATGC CGCCTGATGA TCCACGGATG AGGGAGTACT 1021 ACATCACCAT GGTGAAGTGG GCCACCAGCA CCAAGGTCGC CGTGACCTGG CTGAACCGGG 1081 CGCAGAACGT GTCCATCCTC ACCCTCTGCG ACGCCACCAC GGGGGTCTGC ACGAAGAAAC 1141 ACGAGGATGA AAGTGAGGCC TGGCTCCACA GACAGAATGA AGAACCTGTG TTCTCCAAGG 1201 ATGGCCGAAA GTTTTTCTTC ATCAGAGCCA TCCCCCAGGG AGGACGAGGA GNGttctatc 1261 acatcacggt gtcctcgtcc cagcccaaca gcagcaacga caacatccag tccatcacct 1321 ccggggactg ggacgtgacc aagatcctag cctacgatga gaaggggaat aagatctact 1381 tcctgagcac ggaggacctg cctcggagac gacaactcta cagtgccaac acggtgggca 1441 acttcaacag gcagtgcctc tcctgtgacc tggttgagaa ctgcacctac ttcagcgctt 1501 ccttcagcca tagcatggac ttcttcctgc tcaagtgcga aggtcctggt gttcctatgg 1561 tgacggtgca caacacaaca gataagaaaa aaatgtttga cctagaaaca aatgaacatg 1621 tcaagaaggc cataaatgac cgacagatgc ctaaagtgga atacagggac attgagattg 1681 atgattacaa cctgcccatg cagatactga agccagcaac cttcaccgac accacccact 1741 accctctgct cctggtggtg gatggcaccc caggcagcca gagtgtggct gagaagttcg 1801 aggtgagctg ggagacggtg atggtgagca gccacggcgc ggtggtggta aagtgtgacg 1861 gccgtggcag cggcttccaa gggaccaagc tcctgcacga agtgaggcgg cggctgggct 1921 tgctggagga gaaggaccag atggaggccg tgcggacgat gctgaaggag cagtacattg 1981 acaggacgcg cgtggccgtg tttgggaagg attacggtgg ctacctgagc acctacatcc 2041 tcccagcaaa gggagaaaat caaggccaga cattcacctg cggctctgct ctctctccaa 2101 taacagactt caaactctat gcctctgcgt tttccgagag gtacttgggc ctccatggac 2161 ttgacaacag agcatacgag atgaccaagg tagcccatcg agtctccgcg ctggaagaac 2221 agcagttcct gatcattcat cccactgccg atgaaaaaat tcatttccag cacacagcag 2281 aactcattac acaactaatt aggggaaagg ctaattacag cttacagatt tacccggacg 2341 aaagccatta ctttaccagc tccagcctca aacagcatct gtaccggtcc atcatcaact 2401 tcttcgtgga atgcttcagg atccaggaca aactgctgac agtcacagcg AGGGAGGACG 2461 AGGAGGAGGA CTTGCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 2521 caatttgttg caacgaac