Construct: ORF ccsbBroadEn_14764

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018977.1_s300c1, BRDN0000458273
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
PI4KA (5297)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5297 PI4KA phosphatidylinositol 4-kina... XM_017028830.1 57.5% 15.1% (many diffs)
2 human 728233 PI4KAP1 phosphatidylinositol 4-kina... NR_003563.1 52.9% (many diffs)
3 human 375133 PI4KAP2 phosphatidylinositol 4-kina... NR_003700.1 50.4% (many diffs)
4 human 5297 PI4KA phosphatidylinositol 4-kina... NM_001362862.1 40.8% 10.7% (many diffs)
5 human 5297 PI4KA phosphatidylinositol 4-kina... NM_001362863.1 40.6% 10.7% (many diffs)
6 human 5297 PI4KA phosphatidylinositol 4-kina... NM_058004.4 40.2% 10.6% (many diffs)
7 human 5297 PI4KA phosphatidylinositol 4-kina... XR_937868.1 35.8% (many diffs)
8 human 5297 PI4KA phosphatidylinositol 4-kina... XM_005261635.1 26.9% 10.4% (many diffs)
9 mouse 224020 Pi4ka phosphatidylinositol 4-kina... XM_006522037.2 64.6% 18.6% (many diffs)
10 mouse 224020 Pi4ka phosphatidylinositol 4-kina... NM_001001983.2 37% 10.7% (many diffs)
11 mouse 224020 Pi4ka phosphatidylinositol 4-kina... XM_006522034.1 36% 10.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
95
ORF end:
806
ORF length:
711
Sequence:
1AATGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT
61TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCATGCGG GAGATGGCAG GGGCCTGGCA
121CATGACGGTG GAGCAGAAAT TTGGCCTGTT TTCTGCTGAG ATAAAGGAAG CAGACCCCCT
181GGCTGCCTCG GAAGCAAGTC AACCCAAACC CTGTCCCCCC GAAGTGACCC CCCACTACAT
241CTGGATCGAC TTCCTGGTGC AGCGGTTTGA GATCGCCAAG TACTGCAGCT CTGACCAAGT
301GGAGATCTTC TCCAGCCTGC TGCAGCGCTC CATGTCCCTG AACATCGGCG GGGCCAAGGG
361GAGCATGAAC CGGCACGTGG CGGCCATCGG GCCCCGCTTC AAGCTGCTGA CCCTGGGGCT
421GTCCCTCCTG CATGCCGATG TGGTTCCAAA TGCAACCATC CGCAATGTGC TTCGCGAGAA
481GATCTACTCC ACTGCCTTTG ACTACTTCAG CTGTCCCCCA AAGTTCCCTA CTCAAGGAGA
541GAAGCGGCTG CGTGAAGACA TAAGCATCAT GATTAAATTT TGGACCGCCA TGTTCTCAGA
601TAAGAAGTAC CTGACCGCCA GCCAGCTTGT TCCCCCAGAT AATCAGGACA CCCGGAGCAA
661CCTGGACATA ACTGTCGGCT CTCGGCAACA AGCCACCCAA GGCTGGATCA ACACATACCC
721CCTGTCCAGC GGCATGTCCA CCATCTCCAA GAAATCAGCA TGTCTAAGAA AACCAACCGG
781GGCTCCCAGC TGCACAAATA CTACATGAAG CGCAGACGCT GCTGCTGTCC CTGCTGGCCA
841CTGAGATCGA GCGTCTCATC ACATGGTACA CCCGCTGTCA GCCCCGGAAC TGGAACTAGA
901CAAGGCCGAA AAAGAACAGC CGTGGCCACT GGGAGATTCT Aagtacatca gcctgagtga
961gaagcagtgg aaggacaacg tgaacctcgc ctggagcatc tctccctacc tagccgtgca
1021gctgcctgcc aggtttaaga acacagaagc cattgggaac gaagtgaccc gtctcgttcg
1081gttggacccg ggagccgtta gtgatgtgcc tgaagcaatc aagttcctgg tcacctggca
1141caccatcgac gccgatgctc cagagctcag ccatgtgctg tgctgggcgc ccacggaccc
1201acccacaggc ctctcctact tctccagcat gtacccgccg caccctctca cggcgcagta
1261cggggtgaaa gtcctgcggt ccttccctcc ggacgccatc ctcttctaca tcccccagat
1321tgtgcaggcc ctcaggtacg acaagatggg ctatgtgcgg gagtatattc tgtgggcagc
1381gtctaaatcc cagcttctgg cacaccagtt catctggaac atgaagacta acatttatct
1441agatgaagag ggccaccaga aagaccctga catcggcgac ctcctggatc agttggtaga
1501ggagatcaca ggctccttgt ccggcccagc gaaggacttt taccagcggg agtttgattt
1561ctttaacaag atcaccaacg tgtcggctat catcaagccc taccctaaag gcgacgagag
1621aaagaaggct tgtctgtcgg ccctgtctga agtgaaggtg cagccgggct gctacctgcc
1681cagcaaccct gaggccattg tgctggacat cgactacaag tctgggaccc cgatgcagag
1741tgctgcaaaa gccccatatc tggccaagtt caaggtgaag cgatgtggag ttagtgaact
1801tgaaaaagaa ggtctgcggt gccgctcaga ctccgaggat gAGTCAGCAA GCAGAAGCCC
1861GACGCCAGAA AGATTTCTGG CAGGCAGCAT CTTCAAAGGT GGGAGACGAC TGCCGGCAAG
1921ACATGCTGGC CCTGCAGATC ATCGACCTCN TCAAAGAACA TCTCCCAGGC TGTCGGCCTG
1981GACCTCTTTG TTTTTCCCNT ACCGCGTGGT GGCCACTGCC CCTGGGTGCG GGGTGATCGA
2041GTGCATCCCC GACTGCACCT CCCGGGACCA GCTGGGCCGC CAGACAGACT TCGGCATGTA
2101CGACTACTTC ACACGCCAGT ACGGGGATGA GTCCACTCTG GCCTTCCAGC AGGCCCGCTA
2161CAACTTCATC CGAAGCATGG CCGCCTACAG CCTCCTGCTG TTCCTGCTGC AGATCAAGGA
2221CAGACACAAC GGCAACATTA TGCTGGACAA GAAGGGTCAT ATCATCCACA TCGACTTTGG
2281CTTCATGTTT GAAAGCTCGC CGGGCGGCAA TCTCGGCTGG GAACCCGACA TCAAGCTGAC
2341GGATGAGATG GTGATGATCA TGGGGGGCAA GATGGAGGCC ACACCCTTCA AGTGGTTCAT
2401GGAGATGTGT GTCCGAGGCT ACCTGGCTGT GCGGCCCTAC ATGGACGCGG TCGTCTCCCT
2461GGTCACTCTC ATGTTGGACA CGGGCCTGCC CTGTTTTCGC GGCCAGACAA TCAAGCTCTT
2521GAAGCACAGG TTTAGCCCCA ACATGACTGA GCGCGAGGCT GCAAATTTCA TCATGAAGGT
2581CATCCAGAGC TGCTTCCTCA GCAACAGGAG CCGGACCTAC GACATGATCC AGTACTATCA
2641GAATGACATC CCCTACTTGC CAACTTTCTT GTACAAAGTT GGCATTATAA GAAAGCATTG
2701CTTATCAATT TGTTGCAACG AACAGGTCAC TATCAGTCAA AATAAAATCA TTATTGCCCA
2761TCCTCAG

Download FASTA (ORF) (Full)

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