Construct: ORF ccsbBroadEn_14861

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018873.1_s300c1, BRDN0000458169
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
TGFBR1 (7046)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7046 TGFBR1 transforming growth factor ... NM_004612.4 98.9% 43.4% (many diffs)
2 human 7046 TGFBR1 transforming growth factor ... NM_001306210.2 98.1% 43.1% (many diffs)
3 human 7046 TGFBR1 transforming growth factor ... XM_011518949.2 85.3% 30% (many diffs)
4 human 7046 TGFBR1 transforming growth factor ... XM_024447658.1 85.3% 30% (many diffs)
5 human 7046 TGFBR1 transforming growth factor ... XM_011518948.2 84.6% 29.8% (many diffs)
6 human 7046 TGFBR1 transforming growth factor ... XM_017015063.1 84.6% 29.8% (many diffs)
7 human 7046 TGFBR1 transforming growth factor ... NM_001130916.3 83.6% 28.2% (many diffs)
8 human 7046 TGFBR1 transforming growth factor ... XM_011518950.2 70% 14.8% (many diffs)
9 mouse 21812 Tgfbr1 transforming growth factor,... NM_001312868.1 89.5% 40.1% (many diffs)
10 mouse 21812 Tgfbr1 transforming growth factor,... NM_009370.3 88.8% 39.8% (many diffs)
11 mouse 21812 Tgfbr1 transforming growth factor,... XM_017320103.1 77.5% 28.8% (many diffs)
12 mouse 21812 Tgfbr1 transforming growth factor,... NM_001312869.1 74.3% 19.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
91
ORF end:
823
ORF length:
732
Sequence:
1ATTATTTTGA CTGATAGTGA CCTGTTCGTT GCAACAAATT GATGAGCAAT GCTTTTTTAT
61AATGCCAACT TTGTACAAAA AAGTTGGCCC ATGGAGGCGG CGGTCGCTGC TCCGCGTCCC
121CGGCTGCTCC TCCTCGTGCT GGCGGCGGTG GCGGCGGCGG CGGCGGCGCT GCTCCCGGGG
181GCGACGGCGT TACAGTGTTT CTGCCACCTC TGTACAAAAG ACAATTTTAC TTGTGTGACA
241GATGGGCTCT GCTTTGTCTC TGTCACAGAG ACCACAGACA AAGTTATACA CAACAGCATG
301TGTATAGCTG AAATTGACTT AATTCCTCGA GATAGGCCGT TTGTATGTGC ACCCTCTTCA
361AAAACTGGGT CTGTGACTAC AACATATTGC TGCAATCAGG ACCATTGCAA TAAAATAGAA
421CTTCCAACTA CTGTAAAGTC ATCACCTGGC CTTGGTCCTG TGGAACTGGC AGCTGTCATT
481GCTGGACCAG TGTGCTTCGT CTGCATCTCA CTCATGTTGA TGGTCTATAT CTGCCACAAC
541CGCACTGTCA TTCACCATCG AGTGCCAAAT GAAGAGGACC CTTCATTAGA TCGCCCTTTT
601ATTTCAGAGG GTACTACGTT GAAAGACTTA ATTTATGATA TGACAACGTC AGGTTCTGGC
661TCAGGTTTAC CATTGCTTGT TCAGAGAACA ATTGCGAGAA CTATTGTGTT ACAAGAAAGC
721ATTGGCAAAG TCGATTTGGA GAAGTTTGGA GAGGAAAGTG GCGGGGAGAA GAAGTTGCTG
781TTAAGATATT CTCCTCTAGA GAAGNACGTT NGGTTGNTNC CGTGAGGCAG AGATTTTATC
841AAANTGTAAA TGTTACGTCA TGAAAACATC CTGGGGATTN NTAGCAGCAG ACATAAAAGA
901CAATGGTACT TGGACTCAGC TCTGGTTGGT GTCAGATTAT CATGAGCATG GATCCCTTTT
961TGATTACTTA AACAGATACA CAGTTACTGT GGAAGGAATG ATAAAACTTG CTCTGTCCAC
1021GGCGAGCGGT CTTGCCCATC TTCACATGGA GATTGTTGGT ACCCAAGGAA AGCCAGCCAT
1081TGCTCATAGA GATTTGAAAT CAAAGAATAT CTTGGTAAAG AAGAATGGAA CTTGCTGTAT
1141TGCAGACTTA GGACTGGCAG TAAGACATGA TTCAGCCACA GATACCATTG ATATTGCTCC
1201AAACCACAGA GTGGGAACAA AAAGGTACAT GGCCCCTGAA GTTCTCGATG ATTCCATAAA
1261TATGAAACAT TTTGAATCCT TCAAACGTGC TGACATCTAT GCAATGGGCT TAGTATTCTG
1321GGAAATTGCT CGACGATGTT CCATTGGTGG AATTCATGAA GATTACCAAC TGCCTTATTA
1381TGATCTTGTA CCTTCTGACC CATCAGTTGA AGAAATGAGA AAAGTTGTTT GTGAACAGAA
1441GTTAAGGCCA AATATCCCAA ACAGATGGCA GAGCTGTGAA GCCTTGAGAG TAATGGCTAA
1501AATTATGAGA GAATGTTGGT ATGCCAATGG AGCAGCTAGG CTTACAGCAT TGCGGATTAA
1561GAAAACATTA TCGCAACTCA GTCAACAGGA AGGCATCAAA ATGTTGCCAA CTTTCTTGTA
1621CAAAGTTGGC ATTATAAGAA AGCATTGCTT ATCAATTTGT TGCAACGAAC AGGTCACTAT
1681CAGTCAAAAT AAAATCATTA TTGCCATCCC AGCCTGATA

Download FASTA (ORF) (Full)