Construct: ORF ccsbBroadEn_14861
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018873.1_s300c1, BRDN0000458169
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- TGFBR1 (7046)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7046 | TGFBR1 | transforming growth factor ... | NM_004612.4 | 98.9% | 43.4% | (many diffs) |
| 2 | human | 7046 | TGFBR1 | transforming growth factor ... | NM_001306210.2 | 98.1% | 43.1% | (many diffs) |
| 3 | human | 7046 | TGFBR1 | transforming growth factor ... | XM_011518949.2 | 85.3% | 30% | (many diffs) |
| 4 | human | 7046 | TGFBR1 | transforming growth factor ... | XM_024447658.1 | 85.3% | 30% | (many diffs) |
| 5 | human | 7046 | TGFBR1 | transforming growth factor ... | XM_011518948.2 | 84.6% | 29.8% | (many diffs) |
| 6 | human | 7046 | TGFBR1 | transforming growth factor ... | XM_017015063.1 | 84.6% | 29.8% | (many diffs) |
| 7 | human | 7046 | TGFBR1 | transforming growth factor ... | NM_001130916.3 | 83.6% | 28.2% | (many diffs) |
| 8 | human | 7046 | TGFBR1 | transforming growth factor ... | XM_011518950.2 | 70% | 14.8% | (many diffs) |
| 9 | mouse | 21812 | Tgfbr1 | transforming growth factor,... | NM_001312868.1 | 89.5% | 40.1% | (many diffs) |
| 10 | mouse | 21812 | Tgfbr1 | transforming growth factor,... | NM_009370.3 | 88.8% | 39.8% | (many diffs) |
| 11 | mouse | 21812 | Tgfbr1 | transforming growth factor,... | XM_017320103.1 | 77.5% | 28.8% | (many diffs) |
| 12 | mouse | 21812 | Tgfbr1 | transforming growth factor,... | NM_001312869.1 | 74.3% | 19.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 91
- ORF end:
- 823
- ORF length:
- 732
- Sequence:
-
1 ATTATTTTGA CTGATAGTGA CCTGTTCGTT GCAACAAATT GATGAGCAAT GCTTTTTTAT 61 AATGCCAACT TTGTACAAAA AAGTTGGCCC ATGGAGGCGG CGGTCGCTGC TCCGCGTCCC 121 CGGCTGCTCC TCCTCGTGCT GGCGGCGGTG GCGGCGGCGG CGGCGGCGCT GCTCCCGGGG 181 GCGACGGCGT TACAGTGTTT CTGCCACCTC TGTACAAAAG ACAATTTTAC TTGTGTGACA 241 GATGGGCTCT GCTTTGTCTC TGTCACAGAG ACCACAGACA AAGTTATACA CAACAGCATG 301 TGTATAGCTG AAATTGACTT AATTCCTCGA GATAGGCCGT TTGTATGTGC ACCCTCTTCA 361 AAAACTGGGT CTGTGACTAC AACATATTGC TGCAATCAGG ACCATTGCAA TAAAATAGAA 421 CTTCCAACTA CTGTAAAGTC ATCACCTGGC CTTGGTCCTG TGGAACTGGC AGCTGTCATT 481 GCTGGACCAG TGTGCTTCGT CTGCATCTCA CTCATGTTGA TGGTCTATAT CTGCCACAAC 541 CGCACTGTCA TTCACCATCG AGTGCCAAAT GAAGAGGACC CTTCATTAGA TCGCCCTTTT 601 ATTTCAGAGG GTACTACGTT GAAAGACTTA ATTTATGATA TGACAACGTC AGGTTCTGGC 661 TCAGGTTTAC CATTGCTTGT TCAGAGAACA ATTGCGAGAA CTATTGTGTT ACAAGAAAGC 721 ATTGGCAAAG TCGATTTGGA GAAGTTTGGA GAGGAAAGTG GCGGGGAGAA GAAGTTGCTG 781 TTAAGATATT CTCCTCTAGA GAAGNACGTT NGGTTGNTNC CGTGAGGCAG AGATTTTATC 841 AAANTGTAAA TGTTACGTCA TGAAAACATC CTGGGGATTN NTAGCAGCAG ACATAAAAGA 901 CAATGGTACT TGGACTCAGC TCTGGTTGGT GTCAGATTAT CATGAGCATG GATCCCTTTT 961 TGATTACTTA AACAGATACA CAGTTACTGT GGAAGGAATG ATAAAACTTG CTCTGTCCAC 1021 GGCGAGCGGT CTTGCCCATC TTCACATGGA GATTGTTGGT ACCCAAGGAA AGCCAGCCAT 1081 TGCTCATAGA GATTTGAAAT CAAAGAATAT CTTGGTAAAG AAGAATGGAA CTTGCTGTAT 1141 TGCAGACTTA GGACTGGCAG TAAGACATGA TTCAGCCACA GATACCATTG ATATTGCTCC 1201 AAACCACAGA GTGGGAACAA AAAGGTACAT GGCCCCTGAA GTTCTCGATG ATTCCATAAA 1261 TATGAAACAT TTTGAATCCT TCAAACGTGC TGACATCTAT GCAATGGGCT TAGTATTCTG 1321 GGAAATTGCT CGACGATGTT CCATTGGTGG AATTCATGAA GATTACCAAC TGCCTTATTA 1381 TGATCTTGTA CCTTCTGACC CATCAGTTGA AGAAATGAGA AAAGTTGTTT GTGAACAGAA 1441 GTTAAGGCCA AATATCCCAA ACAGATGGCA GAGCTGTGAA GCCTTGAGAG TAATGGCTAA 1501 AATTATGAGA GAATGTTGGT ATGCCAATGG AGCAGCTAGG CTTACAGCAT TGCGGATTAA 1561 GAAAACATTA TCGCAACTCA GTCAACAGGA AGGCATCAAA ATGTTGCCAA CTTTCTTGTA 1621 CAAAGTTGGC ATTATAAGAA AGCATTGCTT ATCAATTTGT TGCAACGAAC AGGTCACTAT 1681 CAGTCAAAAT AAAATCATTA TTGCCATCCC AGCCTGATA