Construct: ORF ccsbBroadEn_14869
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019000.1_s300c1, BRDN0000458618
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TXK (7294)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7294 | TXK | TXK tyrosine kinase | NM_003328.3 | 100% | 100% | |
| 2 | human | 7294 | TXK | TXK tyrosine kinase | XM_024454200.1 | 95.7% | 95.6% | (many diffs) |
| 3 | human | 7294 | TXK | TXK tyrosine kinase | XM_017008581.2 | 95.2% | 95.2% | 0_1ins75 |
| 4 | human | 7294 | TXK | TXK tyrosine kinase | XM_011513747.3 | 91.6% | 91.5% | (many diffs) |
| 5 | human | 7294 | TXK | TXK tyrosine kinase | XM_017008582.2 | 64.1% | 64.1% | 0_1ins567 |
| 6 | human | 7294 | TXK | TXK tyrosine kinase | XM_011513748.3 | 54.8% | 54.8% | 0_1ins714 |
| 7 | human | 7294 | TXK | TXK tyrosine kinase | XR_925166.3 | 24.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1650
- ORF length:
- 1581
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcaccat gatcctttcc tcctataaca ccatccagtc ggttttctgt tgctgctgtt 121 gctgttcagt gcagaagcga caaatgagaa cacagataag cctgagcaca gatgaagagc 181 ttccagaaaa atacacccag cgtcgcaggc cgtggctcag ccaattgtca aataagaagc 241 aatccaacac gggccgtgtg cagccgtcaa aacgaaagcc actgcctccc ctcccaccct 301 ctgaggttgc tgaagagaag atccaagtca aggcacttta tgattttctg cccagagaac 361 cctgtaattt agccttaagg agagcagaag aatacctgat actggagaaa tacaatcctc 421 actggtggaa ggcaagagac cgtttgggga atgaaggctt aatcccaagc aactatgtga 481 ctgaaaacaa aataactaat ttagaaatat atgagtggta ccatagaaac attaccagaa 541 atcaggcaga acatctattg agacaagagt ctaaagaagg tgcatttatt gtcagagatt 601 caagacattt aggatcctac acaatttccg tatttatggg agctagaaga agtacggagg 661 ctgccataaa acattatcag ataaaaaaga atgactcagg acagtggtat gtggctgaaa 721 gacacgcctt tcaatcaatc cctgagttaa tctggtatca ccagcacaat gcagccggtc 781 tcatgactcg tctccgatat ccagttgggc tgatgggcag ttgtttacca gccacagctg 841 ggtttagcta cgaaaagtgg gagatagatc catctgagtt ggcttttata aaggagattg 901 gaagcggtca gtttggagtg gtccatttag gtgaatggcg gtcacatatc caggtagcta 961 tcaaggccat caatgaaggc tccatgtctg aagaggattt cattgaagag gccaaagtga 1021 tgatgaaatt atctcattca aagctagtgc aactttatgg agtctgtata cagcggaagc 1081 ccctttacat tgtgacagag ttcatggaaa atggctgcct gcttaactat ctcagggaga 1141 ataaaggaaa gcttaggaag gaaatgctac tgagtgtatg ccaggatata tgtgaaggaa 1201 tggaatatct ggagaggaat ggctatattc atagggattt ggcggcaagg aattgtttgg 1261 tcagttcaac atgcatagta aaaatttcag actttggaat gacaaggtac gttttggatg 1321 atgagtatgt cagttctttt ggagccaagt tcccaatcaa gtggtcccct cctgaagttt 1381 ttcttttcaa taagtacagc agtaaatctg atgtctggtc atttggagtt ttaatgtggg 1441 aagtttttac agaaggaaaa atgccttttg aaaataagtc aaatttgcaa gtcgtggaag 1501 ctatttctga aggcttcagg ctatatcgcc ctcacctggc accaatgtcc atatatgaag 1561 tcatgtacag ctgctggcat gagaaacctg aaggccgccc tacatttgcc gagctgctgc 1621 gggctgtcac agagattgcg gaaacctggt tgccaacttt cttgtacaaa gttggcatta 1681 taagaaagca ttgcttatca atttgttgca acgaac