Transcript: Human XR_925166.3

PREDICTED: Homo sapiens TXK tyrosine kinase (TXK), transcript variant X4, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TXK (7294)
Length:
5708
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_925166.3
NBCI Gene record:
TXK (7294)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_925166.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000121108 CCTACACAATTTCCGTATTTA pLKO.1 658 3UTR 100% 15.000 21.000 N TXK n/a
2 TRCN0000121181 GAGTCTAAAGAAGGTGCATTT pLKO.1 609 3UTR 100% 10.800 15.120 N TXK n/a
3 TRCN0000121180 GCACCAATGTCCATATATGAA pLKO.1 1462 3UTR 100% 5.625 7.875 N TXK n/a
4 TRCN0000195084 CAAGGAATTGTTTGGTCAGTT pLKO.1 1288 3UTR 100% 4.950 6.930 N TXK n/a
5 TRCN0000009998 CCGTATTTATGGGAGCTAGAA pLKO.1 670 3UTR 100% 4.950 6.930 N TXK n/a
6 TRCN0000055429 CCGTATTTATGGGAGCTAGAA pLKO.1 670 3UTR 100% 4.950 6.930 N TXK n/a
7 TRCN0000121111 CCTTTACATTGTGACAGAGTT pLKO.1 1124 3UTR 100% 4.950 6.930 N TXK n/a
8 TRCN0000009999 GACACGCCTTTCAATCAATCC pLKO.1 763 3UTR 100% 4.050 5.670 N TXK n/a
9 TRCN0000196957 GCAAGTCGTGGAAGCTATTTC pLKO.1 1410 3UTR 100% 13.200 10.560 N TXK n/a
10 TRCN0000121110 GCCCAGAGAACCCTGTAATTT pLKO.1 392 3UTR 100% 15.000 10.500 N TXK n/a
11 TRCN0000196460 GCTCAGCCAATTGTCAAATAA pLKO.1 257 3UTR 100% 15.000 10.500 N TXK n/a
12 TRCN0000194951 CAGTGATCCATGCATAGAATA pLKO.1 1955 3UTR 100% 13.200 9.240 N TXK n/a
13 TRCN0000194938 CAGTTCAACATGCATAGTAAA pLKO.1 1304 3UTR 100% 13.200 9.240 N TXK n/a
14 TRCN0000314836 CAGTTCAACATGCATAGTAAA pLKO_005 1304 3UTR 100% 13.200 9.240 N TXK n/a
15 TRCN0000121107 CCCTTGAAGAATTTCATGTTT pLKO.1 2015 3UTR 100% 5.625 3.938 N TXK n/a
16 TRCN0000194674 CCTGAGTTAATCTGGTATCAC pLKO.1 783 3UTR 100% 4.950 3.465 N TXK n/a
17 TRCN0000196365 GCACCTTTATAAATCACATGA pLKO.1 2064 3UTR 100% 4.950 3.465 N TXK n/a
18 TRCN0000314838 GCACCTTTATAAATCACATGA pLKO_005 2064 3UTR 100% 4.950 3.465 N TXK n/a
19 TRCN0000121177 GCCAACCCAAAGAGTCATCTT pLKO.1 1589 3UTR 100% 4.950 3.465 N TXK n/a
20 TRCN0000314784 GCCAACCCAAAGAGTCATCTT pLKO_005 1589 3UTR 100% 4.950 3.465 N TXK n/a
21 TRCN0000121288 GTCCATATATGAAGTCATGTA pLKO.1 1470 3UTR 100% 4.950 3.465 N TXK n/a
22 TRCN0000001577 GAAACAGAATGCCAACCCAAA pLKO.1 1579 3UTR 100% 4.050 2.835 N TXK n/a
23 TRCN0000314837 GAAACAGAATGCCAACCCAAA pLKO_005 1579 3UTR 100% 4.050 2.835 N TXK n/a
24 TRCN0000121109 GCTTAACTATCTCAGGGAGAA pLKO.1 1163 3UTR 100% 4.050 2.835 N TXK n/a
25 TRCN0000121291 TGCTGGCATGAGAAACCTGAA pLKO.1 1495 3UTR 100% 4.050 2.835 N TXK n/a
26 TRCN0000001580 GCTGCCTGCTTAACTATCTCA pLKO.1 1156 3UTR 100% 3.000 2.100 N TXK n/a
27 TRCN0000314783 GCTGCCTGCTTAACTATCTCA pLKO_005 1156 3UTR 100% 3.000 2.100 N TXK n/a
28 TRCN0000121290 GTCAAATAAGAAGCAATCCAA pLKO.1 269 3UTR 100% 3.000 2.100 N TXK n/a
29 TRCN0000121179 GCTGTCACAGAGATTGCGGAA pLKO.1 1546 3UTR 100% 2.160 1.512 N TXK n/a
30 TRCN0000009997 TACCTGATACTGGAGAAATAC pLKO.1 435 3UTR 100% 0.000 0.000 N TXK n/a
31 TRCN0000121178 CCAGGATATATGTGAAGGAAT pLKO.1 1223 3UTR 100% 4.950 2.970 N TXK n/a
32 TRCN0000121287 CCCAAATGTGAAGAAGTGAAA pLKO.1 1813 3UTR 100% 4.950 2.970 N TXK n/a
33 TRCN0000001579 GAATACCTGATACTGGAGAAA pLKO.1 432 3UTR 100% 4.950 2.970 N TXK n/a
34 TRCN0000196461 GAAGAGAAGATCCAAGTCAAG pLKO.1 354 3UTR 100% 4.050 2.430 N TXK n/a
35 TRCN0000121289 GAGTGGTACCATAGAAACATT pLKO.1 555 3UTR 100% 0.000 0.000 N TXK n/a
36 TRCN0000166201 CATGGTGAAACCCTGTCTCTA pLKO.1 3931 3UTR 100% 4.950 2.475 Y ORAI2 n/a
37 TRCN0000256748 GGCAGGAGAATTGCTTGAATC pLKO_005 4020 3UTR 100% 10.800 5.400 Y SMIM11A n/a
38 TRCN0000179120 CAACATGGTGAAACCCTGTTT pLKO.1 3928 3UTR 100% 4.950 2.475 Y LOC339059 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_925166.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14869 pDONR223 0% 24.5% None (many diffs) n/a
2 ccsbBroad304_14869 pLX_304 0% 24.5% V5 (many diffs) n/a
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