Construct: ORF ccsbBroadEn_14944
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018910.1_s300c1, BRDN0000458206
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- ULK2 (9706)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9706 | ULK2 | unc-51 like autophagy activ... | NM_001142610.2 | 99.3% | 73.9% | (many diffs) |
| 2 | human | 9706 | ULK2 | unc-51 like autophagy activ... | NM_014683.4 | 99.3% | 73.9% | (many diffs) |
| 3 | human | 9706 | ULK2 | unc-51 like autophagy activ... | XM_017025424.2 | 97.3% | 72.4% | (many diffs) |
| 4 | human | 9706 | ULK2 | unc-51 like autophagy activ... | XM_017025425.2 | 97.3% | 72.4% | (many diffs) |
| 5 | human | 9706 | ULK2 | unc-51 like autophagy activ... | XM_017025426.2 | 94.8% | 69.9% | (many diffs) |
| 6 | human | 9706 | ULK2 | unc-51 like autophagy activ... | XM_011524087.2 | 87.9% | 62.5% | (many diffs) |
| 7 | human | 9706 | ULK2 | unc-51 like autophagy activ... | XM_017025427.2 | 74.4% | 50% | (many diffs) |
| 8 | human | 9706 | ULK2 | unc-51 like autophagy activ... | XR_001752701.2 | 73.9% | (many diffs) | |
| 9 | human | 9706 | ULK2 | unc-51 like autophagy activ... | XM_017025428.2 | 71.8% | 47.3% | (many diffs) |
| 10 | human | 9706 | ULK2 | unc-51 like autophagy activ... | XR_001752700.2 | 49.8% | (many diffs) | |
| 11 | mouse | 29869 | Ulk2 | unc-51 like kinase 2 | NM_013881.4 | 89.9% | 68.7% | (many diffs) |
| 12 | mouse | 29869 | Ulk2 | unc-51 like kinase 2 | XM_006533508.3 | 88.4% | 67.8% | (many diffs) |
| 13 | mouse | 29869 | Ulk2 | unc-51 like kinase 2 | XM_006533509.3 | 84.4% | 63.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 97
- ORF end:
- 2506
- ORF length:
- 2409
- Sequence:
-
1 ACTGATTTAT TTTGACTGAT AGTGACCTGT TCGTTGCAAC AAATTGATGA GCAATGCTTT 61 TTTATAATGC CAACTTTGTA CAAAAAAGTT GGCACCATGG AGGTGGTGGG TGACTTCGAG 121 TACAGCAAGA GGGATCTCGT GGGACACGGG GCCTTCGCCG TGGTCTTCCG GGGGCGGCAC 181 CGCCAGAAAA CTGATTGGGA GGTAGCTATT AAAAGTATTA ATAAAAAGAA CTTGTCAAAA 241 TCACAAATAC TGCTTGGAAA GGAAATTAAA ATCTTAAAGG AACTTCAGCA TGAAAATATT 301 GTAGCACTCT ATGATGTTCA GGAATTACCC AACTCTGTCT TTTTGGTGAT GGAGTATTGC 361 AATGGTGGAG ACCTCGCAGA TTATTTGCAA GCGAAAGGGA CTCTCAGTGA AGACACGATC 421 AGAGTGTTTC TGCATCAGAT TGCTGCTGCC ATGCGAATCC TGCACAGCAA AGGAATCATC 481 CACAGAGATC TCAAACCACA GAACATCTTG CTGTCCTATG CCAATCGCAG AAAATCAAGT 541 GTCAGTGGTA TTCGCATCAA AATAGCGGAT TTTGGTTTTG CTCGTTACCT ACATAGTAAC 601 ATGATGGCTG CAACACTGTG TGGATCCCCG ATGTACATGG CTCCTGAGGT TATTATGTCT 661 CAACATTATG ATGCTAAGGC TGACTTGTGG AGCATAGGAA CAGTGATATA CCAATGCCTA 721 GTTGGAAAAC CACCTTTTCA GGCCAATAGT CCTCAAGACT TAAAGATGTT TTATGAAAAA 781 AACAGGAGCT TAATGCCTAG TATTCCCAGA GAAACATCAC CTTATTTGGC TAATCTCTTT 841 TGGGTTTGCT TCAGAGAAAC CAAAAAGATA AGAATGGACT TTGAAGCGTT TTTAGCCATC 901 CTTTTTCTTG AGcaaggtcc agtaaaaaaa tcttgcccag ttccagtgcc catgtattct 961 ggttctgtct ctggaagctc ctgtggcagc tctccatctt gtcgttttgc ttctccacca 1021 tcccttccag atatgcagca tattcaggaa gaaaacttat cttccccacc attgggtcct 1081 cccaactatc tacaagtttc caaagattct gccagtacta gtagcaagaa ctcttcttgt 1141 gacacggatg actttgtttt ggtgccacac aacatctcgt cagaccactc atgtgatatg 1201 ccaatgggga ctgctggcag acgtgcttca aatgaattct tggtgtgtgg agggcagtgt 1261 cagcctactg tgtcacctca cagcgaaaca gcaccaattc cagttcctac tcaaataagg 1321 aattatcagc gcatagagca gaatcttaca tctactgcca gctcaggcac aaatgtacat 1381 ggttctccaa gatctgcagt ggtacgaagg tccaacacca gccccatggg cttcctccgg 1441 ccgggatcat gctccccagt accagcagac acagcacaga cagttggacg aaggctctcc 1501 actgggtctt ctaggcctta ctcaccttcc cctttggttg gtaccattcc tgagcaattc 1561 agtcagtgct gctgtgggca tcctcagggc catgactcca ggagtagaaa ctcctcaggt 1621 tctccagtgc cacaagctca gtccccacag tctctcttat cgggtgctag actgcagagc 1681 gcccccaccc tcactgacat ctatcagaac aagcagaagc tcagaaaaca gcactctgac 1741 cccgtgtgcc catcccatac tggggctggg tacagctact cgcctcagcc cagtcggcct 1801 ggcagccttg gaacttctcc caccaagcac ttggggtcct ctccacggag ttctgactgg 1861 ttctttaaaa ctcctttgcc aacaatcatt ggctctccta ctaagaccac agctcctttc 1921 aaaatcccta aaactcaagc atcttccaac ctgttagcct tggttactcg tcatgggcct 1981 gctgaagaac agtcgaaaga tgggaatgag ccacgggaat gtgcccattg cctcttagtg 2041 caaggaagtg agaggcagcg ggccgagcag cagagcaagg cagtgtttgg cagatctgtc 2101 agtaccggga agttatcaga tcaacaagga aagactccta tatgtcgaca tcagggcagc 2161 acagacagtt taaatacaga acgaccaatg gatatagctc cggcaggagc ctgtggtggt 2221 gttctggcac ctcctgcagg tacagcagca agttccaagg ctgtcctctt cactgtaggg 2281 tctcctccac acagtgcggc agcccccact tgtacccaca tgttccttcg aacaagaaca 2341 acctcagtgg ggcccagcaa ctccgggggc tctctttgtg ccatgagtgg ccgcgtTTGC 2401 GTGGGGTCCC CCGCTTGCCC CAAGCCTTCG GGTCTTTCCC TTTCCAGGAG CAGAGGCAGC 2461 TCCCAGCCTG AGATACGTGC CTTACGGTGC TTCACCCCCC CAGCCTAGAG GGCTCATCAC 2521 CTTTGAAGCC CCTGAACTGC CGGAGGAGAC GCTGATGGAG CGGGAACACA CAGACACCTT 2581 ACGCCATCTG AATGTGATGC TGATGTTCAC TGAGTGTGTG CTGGACCTGA CAGCCATGAG 2641 GGGAGGAAAC CNTGAGCTGT GCACATCTGC TGTGTCCTTG TACCAGATCC AGGAGAGTGT 2701 GGTGGTGGAC CAGATCAGTC AGCTGAGCAA AGACTGGGGG CGGGTGGAGC AGCTGGTGTT 2761 GTACATGAAA GCAGCACAGC TGCTTGCGGC TTCTCTGCAT CTTGCCAAAG CCCAGATCAA 2821 GTCCGGGAAA CTGAGCCCAT CCACAGCTGT GAAACAAGTT GTCAAGAATC TGAACGAACG 2881 ATATAAATTC TGCATCACCA TGTGCAAGAA ACTTACAGAA AAGCTGAATC GATTCTTCTC 2941 TGACAAACAG AGGTTTATTG ATGAAATCAA CAGTGTGACT GCAGAGAAAC TCATCTATAA 3001 TTGTGCTGTA GAAATGGTTC AGTCTGCAGC CCTGGATGAG ATGTTTCAGC AGACCGAAGA 3061 TATTGTTTAT CGCTATCATA AGGCAGCCCT TCTTTTGGAA GGCCTAAGTA GGATTCTACA 3121 GGACCCTGCA GATATTGAAA ATGTGCATAA ATATAAATGT AGTATTGAGA GAAGACTGTC 3181 GGCGCTCTGC CATAGCACCG CAACCGTGTT GCCAACTTTC TTGTACAAAG TTGGCATTAT 3241 AAGAAAGCAT TGCTTATCAA TTTGTTGCAA CGAACAGGTC ACTATCAGTC AAAATAAAAT 3301 CATTATTGCC ATCCCAGCCT AAACCCCC