Construct: ORF ccsbBroadEn_15005
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018865.1_s300c1, BRDN0000458161
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- CDK19 (23097)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23097 | CDK19 | cyclin dependent kinase 19 | NM_015076.5 | 92.3% | 9.7% | (many diffs) |
| 2 | human | 23097 | CDK19 | cyclin dependent kinase 19 | NM_001300960.2 | 85% | 10.6% | (many diffs) |
| 3 | human | 23097 | CDK19 | cyclin dependent kinase 19 | XM_024446376.1 | 81.9% | 1.9% | (many diffs) |
| 4 | human | 23097 | CDK19 | cyclin dependent kinase 19 | NM_001300963.1 | 80.9% | 2.6% | (many diffs) |
| 5 | human | 23097 | CDK19 | cyclin dependent kinase 19 | NM_001300964.2 | 80.9% | 2.6% | (many diffs) |
| 6 | human | 23097 | CDK19 | cyclin dependent kinase 19 | XM_024446377.1 | 80.9% | 2.6% | (many diffs) |
| 7 | human | 23097 | CDK19 | cyclin dependent kinase 19 | XM_024446378.1 | 80.9% | 2.6% | (many diffs) |
| 8 | human | 23097 | CDK19 | cyclin dependent kinase 19 | XM_024446379.1 | 80.9% | 2.6% | (many diffs) |
| 9 | human | 23097 | CDK19 | cyclin dependent kinase 19 | XM_024446380.1 | 80.9% | 2.6% | (many diffs) |
| 10 | human | 23097 | CDK19 | cyclin dependent kinase 19 | XM_024446381.1 | 80.9% | 2.6% | (many diffs) |
| 11 | human | 23097 | CDK19 | cyclin dependent kinase 19 | XM_017010587.2 | 80.8% | 2.6% | (many diffs) |
| 12 | human | 23097 | CDK19 | cyclin dependent kinase 19 | XM_011535630.2 | 75.5% | 2.1% | (many diffs) |
| 13 | human | 23097 | CDK19 | cyclin dependent kinase 19 | XM_011535631.2 | 68.7% | 2.2% | (many diffs) |
| 14 | human | 23097 | CDK19 | cyclin dependent kinase 19 | XM_005266871.3 | 67.6% | 3% | (many diffs) |
| 15 | human | 23097 | CDK19 | cyclin dependent kinase 19 | XM_017010588.1 | 60.7% | 3.4% | (many diffs) |
| 16 | human | 23097 | CDK19 | cyclin dependent kinase 19 | XM_011535632.2 | 49.9% | 2.3% | (many diffs) |
| 17 | mouse | 78334 | Cdk19 | cyclin-dependent kinase 19 | NM_001168304.1 | 83.5% | 9.7% | (many diffs) |
| 18 | mouse | 78334 | Cdk19 | cyclin-dependent kinase 19 | NM_198164.3 | 76.9% | 10.6% | (many diffs) |
| 19 | mouse | 78334 | Cdk19 | cyclin-dependent kinase 19 | NM_001291816.1 | 62.5% | 3% | (many diffs) |
| 20 | mouse | 78334 | Cdk19 | cyclin-dependent kinase 19 | XM_017314164.1 | 62.5% | 3% | (many diffs) |
| 21 | mouse | 78334 | Cdk19 | cyclin-dependent kinase 19 | NM_001291817.1 | 53.8% | 3.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 99
- ORF end:
- 312
- ORF length:
- 213
- Sequence:
-
1 CTAGGATTTT ATTTTGACTG ATAGTGACCT GTTCGTTGCA ACAAATTGAT GAGCAATGCT 61 TTTTTATAAT GCCAACTTTG TACAAAAAAG TTGGCACCAT GGATTATGAT TTCAAGGCGA 121 AGCTGGCGGC GGAGCGGGAG CGGGTGGAGG ATTTGTTTGA GTACGAAGGG TGCAAAGTGG 181 GACGCGGCAC CTACGGTCAC GTCTACAAGG CGAGGCGGAA AGATGGATTC CAGGAGGGCT 241 TCGTGTATGG ACCTCAAGCG TTGGAGGTAG CAGACTTTTC AGCAGAAGAA AAGATGAAAA 301 GGAATATGCA TTGAAGCAAA TTGAAGGCAC AGGAATATCC GTGTCGGCTT GTACAGAGAT 361 TGCACTTTTG CAAGAATTGA ATCACCCTAA TGTGATTGCA TTGCAAAATG TGTTCCTTTC 421 TCACATTGAC ACGAACGTAT GGCTGCTGTT TGATTATGCA GAGCATGACT TGAGGCATAT 481 TATTAACTTT CACCGTGCAT CATAAGCAAA TAAAAAGCTC ATGCCGTTGC CAAGATCTAT 541 GGTTAAATCC TTACTTTACC AGATTCTTGA TGGTATCCAT TACCTCCATG CAAATTGGGT 601 GCTTCACAGA GACTTGAAAC CAGCATATAT CCTAATAATG GTAGAAGGTC CTGACACGAG 661 GAGAGTCAAA ATAGCTGACA TGGATTTTGC CAGATCATTC AATTCTCCTC TAACGCCACT 721 AGCAGATTTG GATCCAGTAC ATGTGACATT TTGCTATCGG GCTCAAATCT TTTGCTTGTG 781 CCATGCATTA TACAAATGTC ATTGATATAT GGACATAGTT GTATATTTGC TCAATTCGTC 841 GACTTCAGCA GCTATTGTAT CACTGTCGTC ATGGAGGATT TCATAANNAA TGCAATCCCT 901 TTTCATCATG ATCAACTGGA TCGGATATTT AGTGTCATGG GGTTTCCTGC AGATAAAGAC 961 TGGGAAGATA TANGAAAGAT GCCAGAATAT CCCACACTTC AAAAAAGACT TTAGAAGAAC 1021 AACGTATGCC AACAGTAGCC TCATAAAGTA CATGGAGAAA CACAAGGTCA AGCCTGACAG 1081 CAAAGTGTTC CTCTTGCTTC AGAAACTCCT GACCATGGAT CCAACCAAGA GAATTACCTC 1141 GGAGCAAGCT CTGCAGGATC CCTATTTTCA GGAGGACCCT TTGCCAACAT TAGATGTATT 1201 TGCCGGCTGC CAGATTCCAT ACCCCAAACG AGAATTCCTT AATGAAGATG ATCCTGAAGA 1261 AAAAGGTGAC AAGAATCAGC AACAGCAGCA GAACCAGCAT CAGCAGCCCA CAGCCCCTCC 1321 ACAGCAGGCA GCAGCCCCTC CACAGGCGCC CCCACCACAG CAGAACAGCA CCCAGACCAA 1381 CGGGACCGCA GGTGGGGCTG GGGCCGGGGT CGGGGGCACC GGAGCAGGGT TGCAGCACAG 1441 CCAGGACTCC AGCCTGAACC AGGTGCCTCC AAACAAGAAG CCACGGCTAG GGCCTTCAGG 1501 CGCAAACTCA GGTGGACCTG TGATGCCCTC GGATTATCAG CACTCCAGTT CTCGCCTGAA 1561 TTACCAAAGC AGCGTTCAGG GATCCTCTCA GTCCCAGAGC ACACTTGGCT ACTCTTCCTC 1621 GTCTCAGCAG AGCTCACAGT ACCACCCATC TCACCAGGCC CACCGGTACT TGCCAACTTT 1681 CTTGTACAAA GTTGGCATTA TAAGAAAGCA TTGCTTATCA ATTTGTTGCA ACGAACAGGT 1741 CACTATCAGT CAAAATAAAA TCATTATTGC CATCCCAGCT GGATAT