Construct: ORF ccsbBroadEn_15007

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018892.1_s300c1, BRDN0000458188
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
MAST2 (23139)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23139 MAST2 microtubule associated seri... XM_011541069.2 60.9% 16.6% (many diffs)
2 human 23139 MAST2 microtubule associated seri... XM_011541068.1 52% 14.2% (many diffs)
3 human 23139 MAST2 microtubule associated seri... XM_011541067.2 51.8% 14.1% (many diffs)
4 human 23139 MAST2 microtubule associated seri... NM_001324321.1 51.8% 14.1% (many diffs)
5 human 23139 MAST2 microtubule associated seri... XM_006710477.3 51.4% 14% (many diffs)
6 human 23139 MAST2 microtubule associated seri... XM_017000755.1 51.2% 14% (many diffs)
7 human 23139 MAST2 microtubule associated seri... XM_017000754.1 50.6% 13.8% (many diffs)
8 human 23139 MAST2 microtubule associated seri... XM_017000753.1 50.3% 13.7% (many diffs)
9 human 23139 MAST2 microtubule associated seri... XM_005270656.5 49.7% 13.6% (many diffs)
10 human 23139 MAST2 microtubule associated seri... XM_005270655.3 49.5% 13.5% (many diffs)
11 human 23139 MAST2 microtubule associated seri... XM_017000752.1 49.3% 13.4% (many diffs)
12 human 23139 MAST2 microtubule associated seri... XM_011541065.1 49.2% 13.4% (many diffs)
13 human 23139 MAST2 microtubule associated seri... NM_001319245.1 47.3% 12.9% (many diffs)
14 human 23139 MAST2 microtubule associated seri... NM_015112.3 47.3% 12.9% (many diffs)
15 human 23139 MAST2 microtubule associated seri... NM_001324320.1 47.1% 12.9% (many diffs)
16 human 23139 MAST2 microtubule associated seri... XM_011541064.2 46.8% 12.8% (many diffs)
17 human 23139 MAST2 microtubule associated seri... XM_011541063.1 46.7% 12.8% (many diffs)
18 human 23139 MAST2 microtubule associated seri... XM_011541062.2 45.7% 12.5% (many diffs)
19 human 23139 MAST2 microtubule associated seri... XM_011541061.2 45.5% 12.4% (many diffs)
20 human 23139 MAST2 microtubule associated seri... XM_011541059.2 45.5% 12.4% (many diffs)
21 mouse 17776 Mast2 microtubule associated seri... XM_006502836.3 45.7% 13.3% (many diffs)
22 mouse 17776 Mast2 microtubule associated seri... XM_006502835.3 45.5% 13.3% (many diffs)
23 mouse 17776 Mast2 microtubule associated seri... XM_006502834.2 44% 12.8% (many diffs)
24 mouse 17776 Mast2 microtubule associated seri... XM_017320018.1 43.4% 12.7% (many diffs)
25 mouse 17776 Mast2 microtubule associated seri... XM_006502840.2 42.1% 12.3% (many diffs)
26 mouse 17776 Mast2 microtubule associated seri... NM_008641.3 42.1% 12.3% (many diffs)
27 mouse 17776 Mast2 microtubule associated seri... NM_001042743.2 41.9% 12.2% (many diffs)
28 mouse 17776 Mast2 microtubule associated seri... XM_006502833.1 41.9% 12.2% (many diffs)
29 mouse 17776 Mast2 microtubule associated seri... XM_006502839.1 21.1% 5.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
82
ORF end:
871
ORF length:
789
Sequence:
1CTGATAGTGA CCTGTTCGTT GCAACAAATT GATGAGCAAT GCTTTTTTAT AATGCCAACT
61TTGTACAAAA AAGTTGGCAC CATGCGGCCT CGCTCCCGGA GCCTCAGTCC CGGACGATCC
121CCAGTATCCT TTGACAGTGA AATAATAATG ATGAATCATG TTTACAAAGA AAGATTCCCA
181AAGGCCACCG CACAAATGGA AGAGCGACTA GCAGAGTTTA TTTCCTCCAA CACTCCAGAC
241AGCGTGCTGC CCTTGGCAGA TGGAGCCCTG AGCTTTATTC ATCATCAGGT GATTGAGATG
301GCCCGAGACT GCCTGGATAA ATCTCGGAGT GGCCTCATTA CATCACAATA CTTCTACGAA
361CTTCAAGATA ATTTGGAGAA ACTTTTACAA GATGCTCATG AGCGCTCAGA GAGCTCAGAA
421GTGGCTTTTG TGATGCAGCT GGTGAAAAAG CTGATGATTA TCATTGCCCG CCCAGCACGT
481CTCCTGGAAT GCCTGGAGTT TGACCCTGAA GAGTTCTACC ACCTTTTAGA AGCAGCTGAG
541GGCCACGCCA AAGAGGGACA AGGGATTAAA TGTGACATTC CCCGCTACAT CGTTAGCCAG
601CTGGGCCTCA CCCGGGATCC CCTAGAAGAA ATGGCCCAGT TGAGCAGCTG TGACAGTCCT
661GACACTCCAG AGACAGATGA TTCTATTGAG GGCCATGGGG CATCTCTGCC ATCTAAAAAG
721ACACCCTCTG AAGAGGACTT CGAGACCATT AAGCTCATCA GCAATGGCGC TATGGGGCTG
781TATTTCTGGT GCGGCACAAG TCCACCCGGC AGCGCTTGCC ATGAGAGATC ACAAGCAGAC
841TTGATCTACG GACAGATCAG CAGGCTTTCG TGAGCGTGAC ATACTGACTT CGCTGAGAAC
901CCCTTGGTGG TCAGCAtgtt ctgctccttt gataccaagc gccacttgtg catggtgatg
961gagtacgttg aagggggaga ctgtgccact ctgctgaaga atattggggc cctgcctgtg
1021gacatggtgc gtctatactt tgcggaaact gtgctggccc tggagtactt acacaactat
1081ggcatcgtgc accgtgacct caagcctgac aacctcctaa ttacatccat ggggcacatc
1141aagctcacgg actttggact gtccaaaatg ggcctcatga gtctgacaac gaacttgtat
1201gagggtcata ttgaaaagga tgcccgggaa ttcctggaca agcaggtatg cgggacccca
1261gaatacattg cgcctgaggt gatcctgcgc cagggctatg ggaagccagt ggactggtgg
1321gccatgggca ttatcctgta tgagttcctg gtgggctgcg tccctttttt tggagatact
1381ccggaggagc tctttgggca ggtgatcagt gatgagattg tgtggcctga gggtgatgag
1441gcactgcccc cagacgccca ggacctcacc tccaaactgc tccaccagaa ccctctggag
1501agacttggca caggcagtgc ctatgaggtg aagcagcacc cattctttac tggtctggac
1561tggacaggac ttctccgcca gaaggctgaa tttattcctc agttggagtc agaggatgat
1621actagctatt ttgacacccg ctcagagcga taccaccaca tggactcgga ggatgaggaa
1681gaagtgagtg aggatggctg ccttgagatc cgccagttct cttcctgctc tccaaggttc
1741aacaaggtgt acagcagcat ggagcggctc tcactgctcg aggagcgccg gacaccaccc
1801ccgaccaagc gcagcctgag tgaggagaag gaggaccatT CGGATGGCCT GGCAGGGCTC
1861AAAGGCCGAG ACGGAGGCTG GGTGATTGGC TCCCCTGAGA TTATTACGGA AGCGGCTGTC
1921GGTGTCTGAG TCGTCCCANC ACAGAGAGTG ACTCAAGCCC TCCAATGAAC ATGCGACGCC
1981GCTGCTCAGG CTTCCTGGAT GCGCCTCGGT TCCCGGAGGG CCNTGAGGAG CCCAGCAGCA
2041CCCNTCAGGA GGCAACCACA GGAGGGTATA TGGGTCCTGA CACCCCCCAT TCTGAGAGGG
2101GGTATCTGGG CCTGTCACTG AACACTCNAG GGGAGCAGCG GCCAAAGCTG GATGAGGAAG
2161CTGTTGGCCG GAGCAGTGGT TCCAGTCCAG CTATGGAGAC CCGAGGCCGT GGGACCTCAC
2221AGCTGGCTGA GGGAGCCACA GCCAAGGCCA TCAGTGACCT GGCTGTGCGT AGGGCCCGCC
2281ACCGGCTGCT CTCTGGGGAC TCAACAGAGA AGCGCACTGC TCGCCCTGTC AACAAAGTGA
2341TCAAGTCCGC CTCAGCCACA GCCCTCTCAC TCCTCATTCC TTCGGAACAC CACACCTGCT
2401CCCCGTTGGC CAGCCCCATG TCCCCACATT CTCAGTCGTC CAACCCATCA TCCCGGGACT
2461CTTCTCCAAG AAGTATGGCT TCACCCTGCG GGCCATTCGC GTCTACATGG GTGACTCCGA
2521TGTCTACACC GTGCACCATA TGGTGTGGCA CGTGGAGGAT GGAGGTCCGG CCAGTGAGGC
2581AGGGCTTCGT CAAGGTGACC TCATCACCCA TGTCAATGGG GAACCTGTGC ATGGCCTGGT
2641GCACACGGAG GTGGTGGAGC TTGCCAACTT TCTTGTACAA AGTTGGCATT ATAAGAAAGC
2701ATTGCTTATC AATTTGTTGC AACGAACAGG TCACTATCAG TCAAAATAAA ATCATTATTG
2761CCATCCCAGC CTGATAT

Download FASTA (ORF) (Full)

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