Construct: ORF ccsbBroadEn_15038
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018896.1_s300c1, BRDN0000458192
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- RPS6KC1 (26750)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_012424.6 | 99% | 20.5% | (many diffs) |
| 2 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001136138.3 | 97.9% | 19.4% | (many diffs) |
| 3 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001349646.1 | 96.1% | 21.1% | (many diffs) |
| 4 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001349647.1 | 88.5% | 18.2% | (many diffs) |
| 5 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001287221.2 | 82.1% | 3.5% | (many diffs) |
| 6 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001349648.1 | 82.1% | 3.5% | (many diffs) |
| 7 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001349649.1 | 82.1% | 3.5% | (many diffs) |
| 8 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001349650.1 | 82.1% | 3.5% | (many diffs) |
| 9 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001349651.1 | 82.1% | 3.5% | (many diffs) |
| 10 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001349652.1 | 82.1% | 3.5% | (many diffs) |
| 11 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001349653.1 | 82.1% | 3.5% | (many diffs) |
| 12 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001287218.2 | 79.2% | 3.6% | (many diffs) |
| 13 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001287219.2 | 79.2% | 3.6% | (many diffs) |
| 14 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001349654.1 | 79.2% | 3.6% | (many diffs) |
| 15 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | XM_017001024.1 | 78.8% | 3.6% | (many diffs) |
| 16 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001349657.1 | 72% | 6.3% | (many diffs) |
| 17 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001349658.1 | 72% | 6.3% | (many diffs) |
| 18 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001349659.1 | 66.8% | 6.8% | (many diffs) |
| 19 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001349660.1 | 66.8% | 6.8% | (many diffs) |
| 20 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001349661.1 | 66.8% | 6.8% | (many diffs) |
| 21 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001349662.1 | 66.8% | 6.8% | (many diffs) |
| 22 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | XM_017001030.1 | 66.8% | 6.8% | (many diffs) |
| 23 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001287220.2 | 56.2% | 8% | (many diffs) |
| 24 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001349663.1 | 56.2% | 8% | (many diffs) |
| 25 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001349664.1 | 56.2% | 8% | (many diffs) |
| 26 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001349665.1 | 56.2% | 8% | (many diffs) |
| 27 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001349666.1 | 56.2% | 8% | (many diffs) |
| 28 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001349667.1 | 56.2% | 8% | (many diffs) |
| 29 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001349668.1 | 56.2% | 8% | (many diffs) |
| 30 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001349669.1 | 56.2% | 8% | (many diffs) |
| 31 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001349670.1 | 56.2% | 8% | (many diffs) |
| 32 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001349671.1 | 56.2% | 8% | (many diffs) |
| 33 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NR_146207.1 | 54.8% | (many diffs) | |
| 34 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NR_146210.1 | 53.7% | (many diffs) | |
| 35 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NM_001349672.1 | 53.4% | 8.3% | (many diffs) |
| 36 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NR_146209.1 | 51.7% | (many diffs) | |
| 37 | human | 26750 | RPS6KC1 | ribosomal protein S6 kinase C1 | NR_146208.1 | 46.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 98
- ORF end:
- 785
- ORF length:
- 687
- Sequence:
-
1 CACGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT 61 TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCACCATG ACCTCTTACC GGGAGCGGAG 121 TGCCGACCTG GCCCGTTTCT ACACTGTCAC CGAGCCCCAG CGACACCCGA GGGGCTACAC 181 AGTATATAAG GTCACCGCCC GGGTTGTTTC ACGAAGAAAT CCAGAGGATG TCCAGGAGAT 241 AATTGTATGG AAGAGATACA GTGATTTTAA GAAACTACAC AAAGAACTAT GGCAAATTCA 301 CAAAAACTTA TTCCGACATT CAGAGTTGTT TCCTCCATTT GCTAAAGGAA TAGTGTTTGG 361 GCGATTTGAT GAAACTGTTA TCGAAGAGAG AAGACAATGT GCTGAAGACC TGCTACAGTT 421 CTCTGCCAAT ATTCCTGCTC TTTACAATAG TAAACAGCTT GAAGACTTTT TCAAGGGTGG 481 AATAATTAAT GATAGTTCTG AATTAATTGG TCCTGCTGAA GCTCACTCAG ATTCCCTCAT 541 TGATACCTTT CCTGAGTGTA GTACGGAAGG CTTCTCCAGT GACAGTGATC TGGTATCTCT 601 TACTGTTGAT GTGGATTCTC TTGCTGAGTT AGATGATGGA ATGGCTTCCA ATCAAAATTC 661 TCCCATTAGA ACTTTTGGTC TCAATCTTTC TTCGGATTCT TCAGCACTAG GGGCTGTTGC 721 TTCTGACAGT GAACAGAGCA AAACAGAAGA GAACGGGAAA GTCGTAGCCT CTTTCCTGGC 781 AGTTTAAAGC CGAAGCTTGC AGAGAGATTA TTTGGAGAAA GCAGAGAATT AATAAGCTGG 841 CTTTAAAAAG AGAGAGACGA CTATGAGCTG CTTCTGATTT TTATAGGAAG GAGTTGATTT 901 ACTCctagaa ggtgttcaag gagagtcaag ccctacccgt cgagaagctg tgaagagaag 961 aacagccgag tacctcatgc gggcagaaag tatctctagt ctttatggga aacctcagct 1021 tgatgatgta tctcagcctc caggatcact aagttcaagg cccctttgga acctaaggag 1081 ccctgccgag gagctgaagg ccttcagagt ccttggggtg attgacaagg ttttacttgt 1141 aatggacaca aggacagaac agactttcat tttaaaaggt ctaaggaaaa gcagtgaata 1201 cagcaggaac agaaagacca tcatcccccg ctgtgtgccc aacatggtgt gtctgcataa 1261 gtacatcatc tctgaggagt cagtatttct tgtgctgcag catgcggaag gtggcaaact 1321 gtggtcatat atcagtaaat ttctaaacag aagtcctgaa gaaagctttg acatcaagga 1381 agtgaaaaaa cctacacttg caaaagttca cctgcagcag ccaacttcta gtcctcagga 1441 cagcagtagc tttgaatcca gaggaagtga tggtggaagc atgcttaaag ctctgccttt 1501 gaagagtagt cttactccaa gttctcaaga tgacagcaac caggaagatg atggccaaga 1561 tagctctcca aagtggccag attctggttc aagttcagaa gaagaatgta ctactagtta 1621 tttaacatta tgcaatgaat atgggcaaga aaagattgaa ccagggtctt tgaatgagga 1681 gcccttcatg aagactgaag ggaatggtgt tgatacaaaa gctattaaaa gcttcccagc 1741 acaccttgct gctgacagtg acagccccag cacacagctg agagctcacg agctgaagtt 1801 cttccccaac gatgacccag aagcagttag ttctccaaga acatcagatt ccctcagtag 1861 atcaaaaaat agccccatgg aattctttag gatagacagt aaggatagcg caagtgaact 1921 cctgggactt gactttggag aaaaattgta tagtctaaaa tcagaacctt tgaaaccatt 1981 ctttactctt ccagatggag acagtgcttc taggagtttt aatactagtg aaagcaaggt 2041 agagtttaaa gctcaggaca ccattagcag gggctcagat gactcagtgc cagttatttc 2101 atttaaagat gctgcttttg atgatgtcag tggtactgat gaaggaagac ctgatcttct 2161 tgtaaattta cctggtgaat tggagtcaac aagagaagct gcagcaatgg gacctactaa 2221 gtttacacaa actaatatag ggataataga aaataaactc ttggaagccc ctgatgtttt 2281 atgcctcagg cttagtactg aacaatgcca agcacatgag gagaaaggca tagaggaact 2341 gagtgatccc tctgggccca aatcctatag tataacagag aaacactatg cacaggagga 2401 tcccaggatg ttatttgtag cagctgttga tcatagtagt tcaggagata tgtctttgtt 2461 aCCCAGCTCA AGATCTTAGT TTTCAAGGAC TNGGAGTGGT TGAGTCAGCA GTAACTGCAA 2521 ACAACACAGA AGAAAAGCTA TTCCGTATTG TAGTCCACTC TCAGGTGCTA ATGAATATAT 2581 GCAAAGCACA GACACTTTAA AAACAGAAGA AGTATGCTGT TNNACAGATC AGACTGATGA 2641 TTTGGCTAAA GAGGAACCAA CTTCTTTATT CCAGAGAGAC TCTGAGACTA AGGGTGAAAG 2701 TGGTTTAGTG CTAGAAGGAG ACAAGGAAAT ACATCAGATT TTTGAGGACC TTGATAAAAA 2761 ATTAGCACTA GCCTCCAGGT TTTACATCCC AGAGGGCTGC ATTCAAAGAT GGGCAGCTGA 2821 AATGGTGGTA GCCCTTGATG CTTTACATAG AGAGGGAATT GTGTGCCGCG ATTTGAACCC 2881 AAACAACATC TTATTGAATG ATAGAGGACA CATTCAGCTA ACGTATTTTA GCAGGTGGAG 2941 TGAGGTTGAA GATTCCTGTG ACAGCGATGC CATAGAGAGA ATGTACTGTG CCCCAGAGGT 3001 TGGAGCAATC ACTGAAGAAA CTGAAGCCTG TGATTGGTGG AGTTTGGGTG CTGTCCTCTT 3061 TGAACTTCTC ACTGGCAAGA CTCTGGTTGA ATGCCATCCA GCAGGAATAA ATACTCACAC 3121 TACTTTGAAC ATGCCAGAAT GTGTCTCTGA AGAGGCTCGC TCACTCATTC AACAGCTCTT 3181 GCAGTTCAAT CCTCTGGAAC GACTTGGTGC TGGAGTTGCT GGTGTTGAAG ATATCAAATC 3241 TCATCCATTT TTTACCCCTG TGGATTGGGC AGAACTGATG AGATTGCCAA CTTTCTTGTA 3301 CAAAGTTGGC ATTATAAGAA AGCATTGCTT ATCAATTTGT TGCAACGAAC AGGTCACTAT 3361 CAGTCAAAAT AAAATCCATT ATTTTGCTCA T