Construct: ORF ccsbBroadEn_15055
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018958.1_s300c1, BRDN0000458254
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- MINK1 (50488)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 50488 | MINK1 | misshapen like kinase 1 | NM_153827.5 | 99.5% | 18.4% | (many diffs) |
| 2 | human | 50488 | MINK1 | misshapen like kinase 1 | XM_011523906.1 | 99.3% | 18.5% | (many diffs) |
| 3 | human | 50488 | MINK1 | misshapen like kinase 1 | NM_001024937.4 | 98% | 18.7% | (many diffs) |
| 4 | human | 50488 | MINK1 | misshapen like kinase 1 | XM_006721531.2 | 97.4% | 18% | (many diffs) |
| 5 | human | 50488 | MINK1 | misshapen like kinase 1 | XM_006721532.2 | 97.3% | 18% | (many diffs) |
| 6 | human | 50488 | MINK1 | misshapen like kinase 1 | XM_017024704.1 | 97.2% | 18.1% | (many diffs) |
| 7 | human | 50488 | MINK1 | misshapen like kinase 1 | NM_015716.5 | 96.8% | 18.9% | (many diffs) |
| 8 | human | 50488 | MINK1 | misshapen like kinase 1 | NM_170663.5 | 96.2% | 18.8% | (many diffs) |
| 9 | human | 50488 | MINK1 | misshapen like kinase 1 | XM_017024705.1 | 95.9% | 18.3% | (many diffs) |
| 10 | human | 50488 | MINK1 | misshapen like kinase 1 | XM_006721536.2 | 94.7% | 18.5% | (many diffs) |
| 11 | human | 50488 | MINK1 | misshapen like kinase 1 | XM_017024706.1 | 94.6% | 18.5% | (many diffs) |
| 12 | human | 50488 | MINK1 | misshapen like kinase 1 | XM_017024707.2 | 93.4% | 14% | (many diffs) |
| 13 | human | 50488 | MINK1 | misshapen like kinase 1 | NM_001321236.2 | 92.6% | 14.7% | (many diffs) |
| 14 | human | 50488 | MINK1 | misshapen like kinase 1 | XM_017024708.1 | 92.2% | 12.8% | (many diffs) |
| 15 | human | 50488 | MINK1 | misshapen like kinase 1 | XR_001752522.2 | 77.7% | (many diffs) | |
| 16 | mouse | 50932 | Mink1 | misshapen-like kinase 1 (ze... | NM_001045959.1 | 90.5% | 18.3% | (many diffs) |
| 17 | mouse | 50932 | Mink1 | misshapen-like kinase 1 (ze... | XM_006533681.3 | 90% | 18.2% | (many diffs) |
| 18 | mouse | 50932 | Mink1 | misshapen-like kinase 1 (ze... | NM_001045964.1 | 89.9% | 18.2% | (many diffs) |
| 19 | mouse | 50932 | Mink1 | misshapen-like kinase 1 (ze... | XM_006533679.2 | 88.6% | 17.9% | (many diffs) |
| 20 | mouse | 50932 | Mink1 | misshapen-like kinase 1 (ze... | XM_006533677.2 | 88.1% | 17.8% | (many diffs) |
| 21 | mouse | 50932 | Mink1 | misshapen-like kinase 1 (ze... | XM_006533678.2 | 88% | 17.8% | (many diffs) |
| 22 | mouse | 50932 | Mink1 | misshapen-like kinase 1 (ze... | NM_016713.2 | 87.9% | 18.8% | (many diffs) |
| 23 | mouse | 50932 | Mink1 | misshapen-like kinase 1 (ze... | NM_176893.2 | 87.4% | 18.7% | (many diffs) |
| 24 | mouse | 50932 | Mink1 | misshapen-like kinase 1 (ze... | XM_017314646.1 | 86% | 18.4% | (many diffs) |
| 25 | mouse | 50932 | Mink1 | misshapen-like kinase 1 (ze... | XM_006533682.3 | 85.5% | 18.3% | (many diffs) |
| 26 | mouse | 50932 | Mink1 | misshapen-like kinase 1 (ze... | XM_017314645.1 | 85.4% | 18.3% | (many diffs) |
| 27 | mouse | 50932 | Mink1 | misshapen-like kinase 1 (ze... | XR_388490.3 | 68.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 99
- ORF end:
- 921
- ORF length:
- 822
- Sequence:
-
1 CATGGATTTT ATTTTGACTG ATAGTGACCT GTTCGTTGCA ACAAATTGAT GAGCAATGCT 61 TTTTTATAAT GCCAACTTTG TACAAAAAAG TTGGCACCAT GGGCGACCCA GCCCCCGCCC 121 GCAGCCTGGA CGACATCGAC CTGTCCGCCC TGCGGGACCC TGCTGGGATC TTTGAGCTTG 181 TGGAGGTGGT CGGCAATGGA ACCTACGGAC AGGTGTACAA GGGTCGGCAT GTCAAGACGG 241 GGCAGCTGGC TGCCATCAAG GTCATGGATG TCACGGAGGA CGAGGAGGAA GAGATCAAAC 301 AGGAGATCAA CATGCTGAAA AAGTACTCTC ACCACCGCAA CATCGCCACC TACTACGGAG 361 CCTTCATCAA GAAGAGCCCC CCGGGAAACG ATGACCAGCT CTGGCTGGTG ATGGAGTTCT 421 GTGGTGCTGG TTCAGTGACT GACCTGGTAA AGAACACAAA AGGCAACGCC CTGAAGGAGG 481 ACTGTATCGC CTATATCTGC AGGGAGATCC TCAGGGGTCT GGCCCATCTC CATGCCCACA 541 AGGTGATCCA TCGAGACATC AAGGGGCAGA ATGTGCTGCT GACAGAGAAT GCTGAGGTCA 601 AGCTAGTGGA TTTTGGGGTG AGTGCTCAGC TGGACCGCAC CGTGGGCAGA CGGAACACTT 661 TCATTGGGAC TCCCTACTGG ATGGCTCCAG AGGTCATCGC CTGTGATGAG AACCCTGATG 721 CCACCTATGA TTACAGGAGT GATATTTGGT CTCTAGGAAT CACAGCCATC GAGATGGCAG 781 AGGGAGCCCC CCCTCTGTGT GACATGCACC CATGCGAGCC CTCTTCCTCA TTCCTCGGAA 841 CCCTCCGCCC AGGCTCAAGT CCCAGGagtg gtctaagaag ttcattgact tcattgacac 901 atgtctcatc aagacttacc tgagccgccc acccacggag cagctactga agtttccctt 961 catccgggac cagcccacgg agcggcaggt ccgcatccag cttaaggacc acattgaccg 1021 atcccggaag aagcggggtg agaaagagga gacagaatat gagtacagcg gcagcgagga 1081 ggaagatgac agccatggag aggaaggaga gccaagctcc atcatgaacg tgcctggaga 1141 gtcgactcta cgccgggagt ttctccggct ccagcaggaa aataagagca actcagaggc 1201 tttaaaacag cagcagcagc tgcagcagca gcagcagcga gaccccgagg cacacatcaa 1261 acacctgctg caccagcggc agcggcgcat agaggagcag aaggaggagc ggcgccgcgt 1321 ggaggagcaa cagcggcggg agcgggagca gcggaagctg caggagaagg agcagcagcg 1381 gcggctggag gacatgcagg ctctgcggcg ggaggaggag cggcggcagg cggagcgcga 1441 gcaggaatac aagcggaagc agctggagga gcagcggcag tcagaacgtc tccagaggca 1501 gctgcagcag gagcatgcct acctcaagtc cctgcagcag cagcaacagc agcagcagct 1561 tcagaaacag cagcagcagc agctcctgcc tggggacagg aagcccctgt accattatgg 1621 tcggggcatg aatcccgctg acaaaccagc ctgggcccga gaggtagaag agagaacaag 1681 gatgaacaag cagcagaact ctcccttggc caagagcaag ccaggcagca cggggcctga 1741 gccccccatc ccccaggcct ccccagggcc cccaggaccc ctttcccaga ctcctcctat 1801 gcagaggccg gtggagcccc aggagggacc gcacaagagc ctggtggcac accgggtccc 1861 actgaagcca tatgcagcac ctgtaccccg atcccagtcc ctgcaggacc agcccacccg 1921 aaacctggct gccttcccag cctcccatga ccccgaccct gccatccccg cacccactgc 1981 cacgcccagt gcccgaggag ctgtcatccg ccagaattca gaccccacct ctgaaggacc 2041 tggccccagc ccgaatcccc cagcctgggt ccgcccagat aacgaggccc cacccaaggt 2101 gcctcagagg acctcatcta tcgccactgc ccttaacacc agtggggccg gagggtcccg 2161 gccagcccag gcagtccgtg ccagacctcg cagcaactcc gcctggcaaa tctatctgca 2221 aaggcgggca gagcggggca ccccaaagcc tccagggccc cctgctcagc cccctggccc 2281 gcccaacgcc tctagtaacc ccgacctcag gaggagcgac cctggctggg aacgctcgga 2341 cagcgtcctt ccagcctctc acgggcacct cccccaggct ggctcactgg agcggaaccg 2401 cgtgggagcc tcctccaaac tggacagctc ccctgtgctc tcccctggga ataaagccaa 2461 gcccgacgac caccgctcac ggccaggccg gcccgcagac tttgtgttgc tgaaagagcg 2521 gactctggac gaggcccctc ggcctcccaa gaaggccatg gactactcgt cgtccagcga 2581 ggaggtggaa agcagtgagg acgacgagga ggaaggcgaa ggcgggccag cagaggggag 2641 cagagatacc cctgggggcc gcagcgatgg ggatacagac agcgtcagca ccatggtggt 2701 ccacgacgtc gaggagatca ccgggaccca gcccccatac gggggcggca ccatggtggt 2761 ccagcgcacc cctgaagagg agcggaacct gctgcatgct gacagcaatg ggtacacaaa 2821 cctgcctgac gtggtccagc ccagccactc acccaccgag aacagcaaag gccaaagccc 2881 accctcgaag gatgggagtg gtgactacca gtctcgtggg ctggtaaagg cccctggcaa 2941 gagctcgttc acgatgtttg tggatctagg gatctaccag cctggaggca gtggggacag 3001 catccccatc acagccctag tgggtggaga gggcactcgg ctcgaccagc tgcagtacga 3061 cgtgaggaag ggttctgtgg tcaacgtgaa tcccaccaac acccgggccc acagtgagac 3121 ccctgagatc cggaagtaca agaagcgatt caactccgag atcctctgtg cagccctttg 3181 gggggtcaac ctgctggtgg gcacggagaa cgggctgatg ttgctggacc gaagtgggca 3241 gggcaaggtg tatggactca ttgggcggcg acgcttccag cagatggatg tgctggaggg 3301 gCTCAACCTG CTTCATCACC ATTCTCAGGG AAAAAGGAAC AAACTGCGGG TGTATTACCT 3361 GTCCTGGCTC CGGAACAGAT TCTGCACATG ACCCAGAGTG AGAGAGCAGG GCTGGACCAC 3421 CGTGGGGACA TGGAGGGCTG CGGGCACTAC CGTGTTGTGA AATACGAGCG GATTAAGTTC 3481 CTGGTCATCG CCCTCAAGAG CTCCGTGGAG GTGTATGCCT GGGCCCCCAA ACCCTACCAC 3541 AAATTCATGG CCTTCAAGTC CTTTGCCGAC CTCCCCCACC GCCCTCTGCT GGTCGACCTG 3601 ACAGTAGAGG AGGGGCAGCG GCTCAAGGTC ATCTATGGCT CCAGTGCTGG CTTCCATGCT 3661 GTGGATGTCG ACTCGGGGAA CAGCTATGAC ATCTACATCC CTGTGCACAT CCAGAGCCAG 3721 ATCACGCCCC ATGCCATCAT CTTCCTCCCC AACACCGACG GCATGGAGAT GCTGCTGTGC 3781 TACGAGGACG AGGGTGTCTA CGTCAACACG TACGGGCGCA TCATTAAGGA TGTGGTGCTG 3841 CAGTGGGGGG AGATGCCTAC TTCTGTGGCC TACATCTGCT CCAACCAGAT AATGGGCTGG 3901 GGTGAGAAAG CCATTGAGAT CCGCTCTGTG GAGACGGGCC ACCTCGACGG GGTCTTCATG 3961 CACAAACGAG CTCAGAGGCT CAAGTTCCTG TGTGAGCGGA ATGACAAGGT GTTTTTTGCC 4021 TCAGTCCGCT CTGGGGGCAG CAGCCAAGTT TACTTCATGA CTCTGAACCG TAACTGCATC 4081 ATGAACTGGT TGCCAACTTT CTTGTACAAA GTTGGCATTA TAAGAAAGCA TTGCTTATCA 4141 ATATCATCAA CGCCCAGGTC ATTATCAGTC AAAATAAAAT CATTATTGCC ATCCAGCTCT 4201 GCGGG