Construct: ORF ccsbBroadEn_15306
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018981.1_s300c1, BRDN0000458277
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NRBP2 (340371)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 340371 | NRBP2 | nuclear receptor binding pr... | NM_178564.4 | 50.8% | 46.4% | (many diffs) |
| 2 | human | 340371 | NRBP2 | nuclear receptor binding pr... | XM_017013382.1 | 44.3% | 40.4% | (many diffs) |
| 3 | human | 340371 | NRBP2 | nuclear receptor binding pr... | XM_017013381.2 | 42.9% | 36.8% | (many diffs) |
| 4 | human | 340371 | NRBP2 | nuclear receptor binding pr... | XM_017013380.1 | 42% | 38.2% | (many diffs) |
| 5 | human | 340371 | NRBP2 | nuclear receptor binding pr... | XM_017013383.1 | 41% | 39.6% | (many diffs) |
| 6 | human | 340371 | NRBP2 | nuclear receptor binding pr... | XR_001745528.1 | 39.3% | (many diffs) | |
| 7 | human | 340371 | NRBP2 | nuclear receptor binding pr... | XM_017013378.1 | 38.5% | 35% | (many diffs) |
| 8 | human | 340371 | NRBP2 | nuclear receptor binding pr... | XR_001745529.1 | 38% | (many diffs) | |
| 9 | human | 340371 | NRBP2 | nuclear receptor binding pr... | XM_017013379.1 | 37.4% | 36.1% | (many diffs) |
| 10 | mouse | 223649 | Nrbp2 | nuclear receptor binding pr... | NM_144847.1 | 85.9% | 83.5% | (many diffs) |
| 11 | mouse | 223649 | Nrbp2 | nuclear receptor binding pr... | XM_006520772.3 | 44.4% | 43.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 129
- ORF end:
- 906
- ORF length:
- 777
- Sequence:
-
1 GGGGGGTGGG GGCCTGGAAT AGCTGGGCCC AATATGATTT TATTTTGACT GATAGTGACC 61 TGTTCGTTGC ACAAATTGAT GAGCAATGCT TTTTTATAAT GCCAACTTTG TACAAAAAAG 121 TTGGCACCAT GTGTGCGCTG GAGATGGCTG TACTGGAAAT CCAGACCAAT GGGGACACCN 181 GGGTCACAGA GGAGNCCATT NNTCGCGCCA GGCACTCGNT NAGTGACCCC AACATGCGGG 241 AGTTCNTCCT TTGCTGCCTG GCCCGGGACC CTGCCCGCCG GCCCTCTGCC CACAGCCTCC 301 TCTTCCACCG CGTGCTCTTC GAGGTGCACT CGCTGAAGCT CCTGGCAGCC CACTGCTTCA 361 TCCAGCACCA GTACCTCATG CCTGAGAATG TGGTGGAGGA GAAGACCAAG GCCATGGACC 421 TGCACGCGGT CTTGGCGGAG CTTCCCCGGC CCCGCAGGCC CCCGCTGCAG TGGCGGTACT 481 CGGAAGTCTC CTTCATGGAG CTGGACAAAT TCCTGGAGGA TGTCAGGAAT GGAATCTACC 541 CACTGATGAA CTTTGCAGCC ACTCGACCCC TGGGGCTGCC CCGTGTGCTG GCCCCACCCC 601 CGGAGGAGGT CCAAAAGGCC AAGACCCCGA CGCCAGAGCC CTTTGACTCT GAGACCAGAA 661 AGGTCATCCA GATGCAGTGC AACCTGGAGA GAAGCGAGGA CAAGGCGCGC TGGCATCTCA 721 CTCTGCTTCT GGTGCTGGAA GACCGGCTGC ACCGGCAGCT GACCTACGAC CTGCTCCCNA 781 CGGACAGCGC CCAGGACCTC GCCTCGGAGC TCGTGCACTA TGGCTTCCTC CACGAGGACN 841 ACCGGATGAA GCTGGCCCGC CTTCCTGGAG AGCACCTTCC TCAAGTACCG TGGGACCCAG 901 GCCTTGCCAA CTTTCTTGTA CAAAGTTGGC ATTATAAGAA AGCATTGCTT ATCAATTTGT 961 TGCAACGAAC AGGTCACTAT CAGTCAAAAT AAAATCATTA TTTGCCATCC AGCTGATATC 1021 CCCTATAGTG AGTCGTATTA CATGGTCATA GCTGTTTTCC C