Construct: ORF ccsbBroadEn_15313

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008142.1_s300c1, BRDN0000391425
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
GOLGA6L5P (374650)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 101927601 GOLGA6L19 golgin A6 family like 19 XM_006725184.3 78.9% 12% (many diffs)
2 human 647042 GOLGA6L10 golgin A6 family like 10 NM_001322400.1 76.6% 12.3% (many diffs)
3 human 100133220 GOLGA6L3 golgin A6 family like 3 NM_001310153.2 75.6% 12.6% (many diffs)
4 human 647042 GOLGA6L10 golgin A6 family like 10 NM_001164465.3 74.2% 12.6% (many diffs)
5 human 440295 GOLGA6L9 golgin A6 family like 9 NM_198181.3 73.4% 15.7% (many diffs)
6 human 643707 GOLGA6L4 golgin A6 family like 4 XM_017022481.1 72.4% 12.6% (many diffs)
7 human 643707 GOLGA6L4 golgin A6 family like 4 XM_017022482.1 72.4% 12.6% (many diffs)
8 human 440295 GOLGA6L9 golgin A6 family like 9 XM_011521601.2 69.8% 16.5% (many diffs)
9 human 643707 GOLGA6L4 golgin A6 family like 4 NM_001267536.3 67.5% 11.4% (many diffs)
10 human 642402 GOLGA6L17P golgin A6 family like 17, p... NR_111962.1 64.5% (many diffs)
11 human 440295 GOLGA6L9 golgin A6 family like 9 XM_017022226.1 41.7% 30.6% (many diffs)
12 human 374650 GOLGA6L5P golgin A6 family like 5, ps... NR_003246.4 23.9% (many diffs)
13 human 102724117 LOC102724117 golgin subfamily A member 6... XR_429586.2 23.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
273
ORF length:
204
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTGGCCCCAA CCCCGCCTCC CTCCCCACCC CGCGATGTCA GAAAAAACAC
121AACAGGGGAA ATTGGCCGCA GCCAAGAAAA AGTTAAAAGC ATATTGGCAG AGGAAGAGCC
181CTGGCATTCC AGCAGGAGCT AACAGGAAAA AGAAAATCAA TGGCAGTAGC CCTGACACAT
241TCACTTCTGG TGGTTACCAC TCACCTGGGG ATTGAGcaac aggtatctac ggggagggcc
301gtgcatcctc tactaccctg gaggatCCTC AGAGCCAGTA CCAAGAACTA GCAGTAGCCC
361TGGATTCAAG CTCCGCAATA ATCAGTCAAC TCACTGAAAA CATCAATTCA CTGGTTCGCA
421CATCTAAGGA GGAGAAGAAG CATGAGATAC ATCTGGTACA GAAGCTTGGG AGGAGCTTGT
481TCAAACTCAA AAACCAGACG GCTGAACCCC TGGCCCCACA GCCCCCAGCA GGGCCATCTA
541AGATGGAGCA GCTACAAGAT GAGACCAACC ACCTAAGGAA GGAGCTAGAG AGTGTGGGAA
601GACAGCTCCA GGCTGAGGTG GAAAACAATC AGATGTTGAG TCTCCTGAAC AGGAGACAGG
661AGGAGAGGCT ACGTGAACAG GAGGAGAGGC TACGTGAACA GGAGGAGAGG CTACGTGAAC
721AGGAGGAGAG GCTACGTGAA CAGGAGGAGA GGCTGTGTGA ACAGGAGGAG AGGCTGTGTG
781AACAGGAGGA GAGGCTACGT GAACAGGAGG AGAGGCTGTG TGAACAGGAG gagaggctac
841gtgaacatga ggagAGGCTG TGTGAACAGG AGGAGAGGCT GTGTGAACAG GAGGAGAGGC
901TACGTGAACA GGAGGAGAGG CTGTGTGAAC AGGAGNAGAG GCTGTGTGAA CAGGAGGAGA
961GGCTGNGTGA ACAGGAGGAG AGGCTACGTG AACAGGAGGA GAGGCTGTGT GAACAGGAGG
1021AGAGGCTACG TGAACAGGAG GAGAGGCTGT GTGAACAGGA GGAGAGGCTA CGTGAACAGG
1081AGGAGAGGCT GTGTGAACAG GAGGAGAGGC TACGTGAACA GGAGGAGAGG CTGTGTGAAC
1141AGGAGAAGCT GCCAGGGCAG GAGAGGCTGC TGGAAGAGGT GGAGAAGCTG TTAGAACAGG
1201AGAGGCGGCA GGAGGAGCAG GAGAGGCTTC GGgagaggga gaggctgctg gaagaggtgg
1261agaagctgtt agaacaggag aggcggcagg aggagcagga gaggctgctg gagagggaga
1321ggctgctgga agaggtggag aagctgttag aacaggagag gcggcaggag gagcaggaga
1381ggctgctgga gagggagagg ctgctggacg aggtggagga gctcctggac gaggtggAGG
1441AGGAGCAGGA GAGGCTTCGG TTGCCAACTT TCTTNTACAA AGTtggcatt ataagaaagc
1501attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)