Construct: ORF ccsbBroadEn_15348
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000824.1_s300c1, BRDN0000395277
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 440295 | GOLGA6L9 | golgin A6 family like 9 | NM_001291420.1 | 64.3% | 52.1% | (many diffs) |
| 2 | human | 440295 | GOLGA6L9 | golgin A6 family like 9 | XM_011521601.2 | 42.8% | 34.7% | (many diffs) |
| 3 | human | 440295 | GOLGA6L9 | golgin A6 family like 9 | NM_198181.3 | 40.8% | 33.1% | (many diffs) |
| 4 | human | 647042 | GOLGA6L10 | golgin A6 family like 10 | NM_001164465.3 | 32.9% | 28.4% | (many diffs) |
| 5 | human | 643707 | GOLGA6L4 | golgin A6 family like 4 | XM_017022481.1 | 32.9% | 29.5% | (many diffs) |
| 6 | human | 643707 | GOLGA6L4 | golgin A6 family like 4 | XM_017022482.1 | 32.9% | 29.5% | (many diffs) |
| 7 | human | 100133220 | GOLGA6L3 | golgin A6 family like 3 | NM_001310153.2 | 32.8% | 29.4% | (many diffs) |
| 8 | human | 647042 | GOLGA6L10 | golgin A6 family like 10 | NM_001322400.1 | 32.3% | 27.7% | (many diffs) |
| 9 | human | 643707 | GOLGA6L4 | golgin A6 family like 4 | NM_001267536.3 | 32.1% | 31.7% | (many diffs) |
| 10 | human | 101927601 | GOLGA6L19 | golgin A6 family like 19 | XM_006725184.3 | 31.7% | 27% | (many diffs) |
| 11 | human | 642402 | GOLGA6L17P | golgin A6 family like 17, p... | NR_111962.1 | 29.7% | (many diffs) | |
| 12 | human | 102724117 | LOC102724117 | golgin subfamily A member 6... | XR_429586.2 | 12.5% | (many diffs) | |
| 13 | human | 102724093 | LOC102724093 | golgin subfamily A member 6... | XR_429585.4 | 11.1% | (many diffs) | |
| 14 | human | 374650 | GOLGA6L5P | golgin A6 family like 5, ps... | NR_003246.4 | 9.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 630
- ORF length:
- 561
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAGCAGCTA CAAGATGAGA CCAACCACCT AAGGAAGGAG CTAGAGAGTG 121 TGGGAAGACA GCTCCAGGCT GAGGTGGAAA ACAATCAGAT GTTGAGTCTC CTGAACAGGA 181 GACAGGAGGA GAGGCTACGT GAACAGGAGG AGAGGCTACG TGAACAGGAG GAGAGGCTGT 241 GTGAACAGGA GGAGAGGCTG TGTGAACAGG AGGAGAGGCT ACGTGAACAG GAGGAGAGGC 301 TGTGTGAACA GGAGAAGCTG CCAGGGCAGG AGAGGCTGCT GGAAGAGGTG GAGAAGCTGT 361 TAGAACAGGA GAGGCGGCAG GAGGNGCAGG AGAGGCTNNG ggagagggag aggctgctgg 421 aagaggtgga gaagctgtta gaacaggaga ggcggcagga ggagcaggag aggctgctgg 481 agagggagag gctgctggaa gaggtggaga agctgttaga acaggagagg cggcaggagg 541 agcaggagag gctgctggag agggagaggc tgctggacga ggtggaggag ctcctggacg 601 aggtggaGGA GGAGCAGGAG AGGCTTCGGT TGCCAACTTT CTTGTACAAA GTtggcatta 661 taagaaagca ttgcttatca atttgttgca acgaac