Construct: ORF ccsbBroadEn_15391
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017043.1_s300c1, BRDN0000385296
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CTBP2 (1488)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_001083914.3 | 100% | 100% | |
2 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_001290214.3 | 100% | 100% | |
3 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_001290215.3 | 100% | 100% | |
4 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_001321012.2 | 100% | 100% | |
5 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_001321013.2 | 100% | 100% | |
6 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_001321014.2 | 100% | 100% | |
7 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_001329.4 | 100% | 100% | |
8 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_005269561.3 | 100% | 100% | |
9 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_005269564.3 | 100% | 100% | |
10 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_005269567.3 | 100% | 100% | |
11 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_005269568.5 | 100% | 100% | |
12 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_005269569.3 | 100% | 100% | |
13 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_005269571.3 | 100% | 100% | |
14 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_005269572.4 | 100% | 100% | |
15 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_006717642.3 | 100% | 100% | |
16 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_011539351.2 | 100% | 100% | |
17 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_011539353.2 | 100% | 100% | |
18 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_011539354.2 | 100% | 100% | |
19 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_011539355.2 | 100% | 100% | |
20 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_017015756.2 | 100% | 100% | |
21 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_017015757.2 | 100% | 100% | |
22 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_024447830.1 | 100% | 100% | |
23 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_011539357.2 | 94.3% | 94.3% | 0_1ins75 |
24 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_011539358.2 | 94.3% | 94.3% | 0_1ins75 |
25 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_024447831.1 | 94.3% | 94.3% | 0_1ins75 |
26 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_001363508.2 | 85.4% | 82.4% | (many diffs) |
27 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_022802.3 | 44% | 43.7% | (many diffs) |
28 | human | 403340 | MGC70870 | C-terminal binding protein ... | NR_003682.1 | 37% | (many diffs) | |
29 | mouse | 13017 | Ctbp2 | C-terminal binding protein 2 | NM_009980.4 | 89.5% | 99.5% | (many diffs) |
30 | mouse | 13017 | Ctbp2 | C-terminal binding protein 2 | XM_006507308.3 | 89.5% | 99.5% | (many diffs) |
31 | mouse | 13017 | Ctbp2 | C-terminal binding protein 2 | XM_006507309.3 | 89.5% | 99.5% | (many diffs) |
32 | mouse | 13017 | Ctbp2 | C-terminal binding protein 2 | XM_006507310.3 | 89.5% | 99.5% | (many diffs) |
33 | mouse | 13017 | Ctbp2 | C-terminal binding protein 2 | XM_006507311.3 | 89.5% | 99.5% | (many diffs) |
34 | mouse | 13017 | Ctbp2 | C-terminal binding protein 2 | XM_006507312.3 | 89.5% | 99.5% | (many diffs) |
35 | mouse | 13017 | Ctbp2 | C-terminal binding protein 2 | XM_006507314.3 | 86.4% | 95.2% | (many diffs) |
36 | mouse | 13017 | Ctbp2 | C-terminal binding protein 2 | NM_001347623.1 | 84.1% | 93.9% | (many diffs) |
37 | mouse | 13017 | Ctbp2 | C-terminal binding protein 2 | XM_006507315.3 | 84.1% | 93.9% | (many diffs) |
38 | mouse | 13017 | Ctbp2 | C-terminal binding protein 2 | NM_001170744.1 | 39.8% | 43.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1401
- ORF length:
- 1335
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatggc ccttgtggat aagcacaaag tcaagagaca gcgattggac agaatttgtg 121 aaggtatccg cccccagatc atgaacggcc ccctgcaccc ccgccccctg gtggcgctgc 181 tggacggccg cgactgcact gtggagatgc ccatcctgaa ggacctggcc actgtggcct 241 tctgtgacgc gcagtcgacg caggaaatcc acgagaaggt tctaaacgaa gccgtgggcg 301 ccatgatgta ccacaccatc accctcacca gggaggacct ggagaagttc aaggccctga 361 gagtgatcgt gcggataggc agtggctatg acaacgtgga catcaaggct gccggcgagc 421 tcggaattgc cgtgtgcaac atcccgtctg cagccgtgga agagacagcg gactctacca 481 tctgccacat cctcaacctg taccggagga acacgtggct gtaccaggca ctgcgggaag 541 gcacgcgggt tcagagcgtg gagcagatcc gcgaggtggc ctcgggagcg gcccgcatcc 601 gtggggagac gctgggcctc attggctttg gtcgcacggg gcaggcggtt gcagttcgag 661 ccaaggcctt tggattcagc gtcatatttt atgaccccta cttgcaggat gggatcgagc 721 ggtccctggg cgtgcagagg gtctacaccc tgcaggattt gctgtatcag agcgactgcg 781 tctccttgca ctgcaatctc aacgaacata accaccacct catcaatgac tttaccataa 841 agcagatgag gcagggagca ttccttgtga acgcagcccg tggcggcctg gtggacgaga 901 aagccttagc acaagccctc aaggagggca ggatacgagg ggcagccctc gacgtgcatg 961 agtcagagcc cttcagcttt gctcagggtc cgttgaaaga tgccccgaat ctcatctgca 1021 ctcctcacac tgcctggtac agtgagcagg cgtcactgga gatgagggag gcagctgcca 1081 ccgagatccg ccgagccatc acaggtcgca tcccagaaag cttaagaaat tgtgtgaaca 1141 aggaattctt tgtcacatca gcgccttggt cagtaataga ccagcaagca attcatcctg 1201 agctcaatgg tgccacatac agatatccgc caggcatcgt gggtgtggct ccaggaggac 1261 ttcctgcagc catggaaggg atcatccctg gaggcatccc agtgactcac aacctcccga 1321 cagtggcaca tccttcccaa gcgccctctc ccaaccagcc cacaaaacac ggggacaatc 1381 gagagcaccc caacgagcaa tnnccaactt tcttgtacaa agttggcatt ataagaaagc 1441 attgcttatc aatttgttgc aacgaac