Construct: ORF ccsbBroadEn_15558
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006720.1_s300c1, BRDN0000397156
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RAB3IL1 (5866)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5866 | RAB3IL1 | RAB3A interacting protein l... | NM_001271686.2 | 100% | 100% | |
| 2 | human | 5866 | RAB3IL1 | RAB3A interacting protein l... | XM_011545199.2 | 83.3% | 81.7% | (many diffs) |
| 3 | human | 5866 | RAB3IL1 | RAB3A interacting protein l... | XM_005274140.5 | 82.9% | 82.9% | 578_796del |
| 4 | human | 5866 | RAB3IL1 | RAB3A interacting protein l... | XM_006718647.4 | 82.7% | 82.7% | 578_796del;1206_1207insGCA |
| 5 | human | 5866 | RAB3IL1 | RAB3A interacting protein l... | NM_013401.4 | 71.7% | 71.3% | (many diffs) |
| 6 | human | 5866 | RAB3IL1 | RAB3A interacting protein l... | XM_011545196.2 | 70.9% | 69.5% | (many diffs) |
| 7 | human | 5866 | RAB3IL1 | RAB3A interacting protein l... | XM_011545197.2 | 62.2% | 59.3% | (many diffs) |
| 8 | human | 5866 | RAB3IL1 | RAB3A interacting protein l... | XM_011545198.2 | 61.1% | 59.3% | (many diffs) |
| 9 | human | 5866 | RAB3IL1 | RAB3A interacting protein l... | XM_011545201.3 | 59.9% | 58.2% | (many diffs) |
| 10 | human | 5866 | RAB3IL1 | RAB3A interacting protein l... | XM_011545200.2 | 49.6% | 35.6% | (many diffs) |
| 11 | mouse | 74760 | Rab3il1 | RAB3A interacting protein (... | XM_017318302.1 | 58.7% | 61.5% | (many diffs) |
| 12 | mouse | 74760 | Rab3il1 | RAB3A interacting protein (... | NM_001347429.1 | 48.7% | 51% | (many diffs) |
| 13 | mouse | 74760 | Rab3il1 | RAB3A interacting protein (... | XM_011247385.2 | 43.7% | 45.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1134
- ORF length:
- 1068
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgga ctcttctgag gagcacgctg ggtgccccgc ccgagggaca tgtcccgtgt 121 tcctggccat gagtgcaggg actgtccgct acgccccatc aggcctgtgc cctgtacttg 181 aggggaactt gagagaagag ccctggggca cagacagccc accccagcca gaccagggcc 241 tcccgccgcc ccttgcagct gtcccggtcc cctggaagag cacggacccc tgccaaggcc 301 acagggagtc cccaggagcc ctggtggaga cctctgcagg ggaggaggcc caaggccagg 361 agggccccgc agccgcccag ctggacgtgt tgcgcctgcg cagctcttcc atggagatcc 421 gagagaaggg ctccgagttc ctgaaggagg agctgcacag agcgcagaag gagctgaagc 481 taaaggacga ggaatgtgag cggctgtcca aggtgcggga gcagctagaa caggagctgg 541 aagagctgac ggccagcctg tttgaggaag ctcacaagat ggttcgagaa gccaacatga 601 agcaggcggc atcagaaaag cagctgaagg aggctcgggg caaggtggac acaatcctgt 661 ttgcagagtt ccaggcctgg agggaatccc ccaccctgga caagacctgc cccttcctgg 721 aaagggtgta ccgagaggac gtgggcccct gcctggactt cacaatgcag gagctctcgg 781 tgctggtacg ggccgccgtg gaggacaaca cgctcaccat tgagccggtg gcttcgcaga 841 cgctgcccac agtgaaggtg gccgaggttg actgtagcag caccaacaca tgtgccctga 901 gcgggctgac ccgcacctgc cgccaccgaa tccggctcgg ggactccaaa agccattact 961 acatctcgcc atcttcccgg gccaggatca ccgcagtgtg caacttcttc acctacatcc 1021 gctacatcca gcaaggcctg gtgcggcagg acgcagagcc catgttctgg gagatcatga 1081 ggttgcggaa ggagatgtca ctggccaagc tcggcttctt cccccaggag gcttnnccaa 1141 ctttcttgta caaagttggc attataagaa agcattgctt atcaatttgt tgcaacgaac