Construct: ORF ccsbBroadEn_15579

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005543.1_s300c1, BRDN0000392174
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RPS4Y1 (6192)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6192 RPS4Y1 ribosomal protein S4 Y-link... NM_001008.4 100% 100%
2 human 140032 RPS4Y2 ribosomal protein S4 Y-link... NM_001039567.3 93.5% 93.9% (many diffs)
3 human 6191 RPS4X ribosomal protein S4 X-linked NM_001007.5 82.1% 92.7% (many diffs)
4 mouse 20102 Rps4x ribosomal protein S4, X-linked NM_009094.2 80.9% 92.7% (many diffs)
5 mouse 20102 Rps4x ribosomal protein S4, X-linked XM_011247553.2 75.5% 85.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
855
ORF length:
789
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatggc ccggggcccc aagaagcact taaagcgtgt tgcagcgccg aagcattgga
121tgcttgacaa actaacgggt gtatttgcac ctcgtccatc gacaggtccc cacaagctga
181gggaatgtct tcctctgatc gtcttcctca ggaatagact caagtatgcg ttgactggag
241atgaggtaaa gaagatatgt atgcaacgtt tcatcaaaat tgatggcaag gttcgagtgg
301atgtcacata ccctgctgga ttcatggatg tcatcagcat cgagaagaca ggtgaacatt
361tccgcctggt ctatgacacc aagggccgtt ttgctgttca ccgcatcaca gtggaagagg
421caaagtacaa gttgtgcaaa gtgaggaaga ttactgtggg agtgaaggga atccctcacc
481tggtgactca tgatgctcga accatccgct acccagatcc tgtcatcaag gtgaacgata
541ctgtgcagat tgatttaggg actggcaaga taatcaactt tatcaaattt gatacaggca
601atttgtgtat ggtgattggt ggagccaacc tcggtcgtgt tggtgtgatc accaacaggg
661aaagacatcc tggttctttt gatgtggtgc atgtgaagga tgccaatggc aacagctttg
721ccacgaggct ttccaacatt tttgtcattg gcaatggcaa taaaccttgg atttccctgc
781ccaggggaaa gggcattcga cttactgttg ctgaagagag agataagagg ctggccacca
841aacagagcag tggctnncca actttcttgt acaaagttgg cattataaga aagcattgct
901tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)