Construct: ORF ccsbBroadEn_15681
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004991.1_s300c1, BRDN0000385011
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SFI1 (9814)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_024452311.1 | 45.7% | 42.1% | (many diffs) |
| 2 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_024452310.1 | 43.6% | 40.2% | (many diffs) |
| 3 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_024452309.1 | 43.4% | 40% | (many diffs) |
| 4 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_011530587.3 | 38.1% | 35.1% | (many diffs) |
| 5 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_017029159.2 | 38.1% | 35.1% | (many diffs) |
| 6 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_017029157.1 | 25% | 23.1% | (many diffs) |
| 7 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_017029156.2 | 24.5% | 22.6% | (many diffs) |
| 8 | human | 9814 | SFI1 | SFI1 centrin binding protein | NM_001258327.2 | 24.1% | 22.2% | (many diffs) |
| 9 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_017029155.1 | 23.9% | 22% | (many diffs) |
| 10 | human | 9814 | SFI1 | SFI1 centrin binding protein | NM_001258326.2 | 23.8% | 22% | (many diffs) |
| 11 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_006724390.3 | 23.8% | 22% | (many diffs) |
| 12 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_017029152.1 | 23.5% | 21.6% | (many diffs) |
| 13 | human | 9814 | SFI1 | SFI1 centrin binding protein | NM_001258325.1 | 23.3% | 21.5% | (many diffs) |
| 14 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_017029154.2 | 23.3% | 21.5% | (many diffs) |
| 15 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_017029153.1 | 23.2% | 21.4% | (many diffs) |
| 16 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_017029146.2 | 23% | 21.2% | (many diffs) |
| 17 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_011530582.2 | 22.9% | 21.1% | (many diffs) |
| 18 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_011530583.2 | 22.9% | 21.1% | (many diffs) |
| 19 | human | 9814 | SFI1 | SFI1 centrin binding protein | NM_014775.4 | 22.8% | 21.1% | (many diffs) |
| 20 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_017029151.2 | 22.8% | 21.1% | (many diffs) |
| 21 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_024452308.1 | 22.8% | 21% | (many diffs) |
| 22 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_017029145.1 | 22.8% | 21% | (many diffs) |
| 23 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_017029149.2 | 22.7% | 20.9% | (many diffs) |
| 24 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_017029150.2 | 22.7% | 20.9% | (many diffs) |
| 25 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_017029147.1 | 22.7% | 20.9% | (many diffs) |
| 26 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_017029148.1 | 22.7% | 20.9% | (many diffs) |
| 27 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_017029141.2 | 22.5% | 20.8% | (many diffs) |
| 28 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_017029140.1 | 22.4% | 20.6% | (many diffs) |
| 29 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_017029144.1 | 22.3% | 20.6% | (many diffs) |
| 30 | human | 9814 | SFI1 | SFI1 centrin binding protein | NM_001007467.3 | 22.3% | 20.5% | (many diffs) |
| 31 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_017029139.2 | 22.3% | 20.5% | (many diffs) |
| 32 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_017029143.1 | 22.3% | 20.5% | (many diffs) |
| 33 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_017029142.1 | 22.1% | 20.4% | (many diffs) |
| 34 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_011530581.3 | 22% | 20.3% | (many diffs) |
| 35 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_011530580.2 | 22% | 20.2% | (many diffs) |
| 36 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_011530579.3 | 21.9% | 20.2% | (many diffs) |
| 37 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_011530576.2 | 21.8% | 20.1% | (many diffs) |
| 38 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_011530577.2 | 21.8% | 20.1% | (many diffs) |
| 39 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_005261868.2 | 21.8% | 20.1% | (many diffs) |
| 40 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_011530575.2 | 21.7% | 20% | (many diffs) |
| 41 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_011530574.3 | 21.5% | 19.8% | (many diffs) |
| 42 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_011530570.2 | 21.4% | 19.7% | (many diffs) |
| 43 | human | 9814 | SFI1 | SFI1 centrin binding protein | XM_011530571.2 | 21.4% | 19.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 948
- ORF length:
- 882
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatggc ccaggcccac cccagcttac ttgctgacct tggcctcgcc tttcctgact 121 ttcagtctcc ctataaaatt ggagatccca cagagatctc agacccccct gcagcccctg 181 gtcagcccag gggaacagac cccatgtttc tttccagcaa cactgcccac tcagcgagga 241 agcagccgcg acgcccacac ttcctgttgg agcctgcgca gagccagagg cctcagaagc 301 cacaggaaca tggcctaggc atggctcagc cagcagcccc ctccctgacg cggcccttcc 361 tggcagaggc cccgacagca ctggtcccac acagccccct gcctggggcc ctgtcaagcg 421 cccctggccc gaagcagccc ccgacggcaa gcacaggccc ggagctgctg ctgctgcctc 481 tttcctcctt catgccctgc ggggcggctg caccagccag ggtgtcagca cagcgggcta 541 ctcctaggga taagcccccg gtcccctcat ccctggccag tgtccctgac ccccatctac 601 tccttcctgg ggacttctca gccaccaggg ctgggcctgg actttcaact gcaggcagcc 661 tggaccttga ggctgaactt gaggagatcc agcagcaact actgcactac cagaccacca 721 agcagaacct ctggtcctgt cggcggcaag cgagcagcct gcgcaggtgg ctggagctga 781 acagagagga gccggggcct gaggaccagg aagtagagca gcaggtgcag aaagagctgg 841 aacaggtgga aatgcagatc cagctgctgg cagaggagct ccaggctcag cgccagccca 901 ttggcgcctg cgttgcccgc atccaggccc tgcggcaggc cctgtgctnn ccaactttct 961 tgtacaaagt tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac