Construct: ORF ccsbBroadEn_15717

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002410.1_s300c1, BRDN0000391062
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PITRM1 (10531)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10531 PITRM1 pitrilysin metallopeptidase 1 NM_014889.4 99.7% 99.5% (many diffs)
2 human 10531 PITRM1 pitrilysin metallopeptidase 1 NM_001242307.1 99.6% 99.4% (many diffs)
3 human 10531 PITRM1 pitrilysin metallopeptidase 1 NM_001347729.1 98.3% 97.6% (many diffs)
4 human 10531 PITRM1 pitrilysin metallopeptidase 1 NM_001347725.2 93.3% 93.1% (many diffs)
5 human 10531 PITRM1 pitrilysin metallopeptidase 1 NM_001347730.1 92% 91.3% (many diffs)
6 human 10531 PITRM1 pitrilysin metallopeptidase 1 NM_001242309.1 89.8% 88.5% (many diffs)
7 human 10531 PITRM1 pitrilysin metallopeptidase 1 XR_001747001.2 89% (many diffs)
8 human 10531 PITRM1 pitrilysin metallopeptidase 1 NR_144638.2 84.8% (many diffs)
9 human 10531 PITRM1 pitrilysin metallopeptidase 1 NR_144641.2 84.7% (many diffs)
10 human 10531 PITRM1 pitrilysin metallopeptidase 1 NR_144640.2 83.8% (many diffs)
11 human 10531 PITRM1 pitrilysin metallopeptidase 1 NR_144639.2 83.7% (many diffs)
12 human 10531 PITRM1 pitrilysin metallopeptidase 1 XR_001747002.2 83.4% (many diffs)
13 human 10531 PITRM1 pitrilysin metallopeptidase 1 XR_001747003.2 83.3% (many diffs)
14 human 10531 PITRM1 pitrilysin metallopeptidase 1 XR_001747000.1 82.6% (many diffs)
15 human 10531 PITRM1 pitrilysin metallopeptidase 1 NM_001347727.2 80% 79.8% (many diffs)
16 human 10531 PITRM1 pitrilysin metallopeptidase 1 XR_001746999.2 78.7% (many diffs)
17 human 10531 PITRM1 pitrilysin metallopeptidase 1 XR_001747004.2 77.2% (many diffs)
18 human 10531 PITRM1 pitrilysin metallopeptidase 1 NM_001347726.2 73.6% 73.4% (many diffs)
19 human 10531 PITRM1 pitrilysin metallopeptidase 1 NM_001347728.2 57.9% 57.8% (many diffs)
20 mouse 69617 Pitrm1 pitrilysin metallepetidase 1 NM_145131.1 81.6% 86.5% (many diffs)
21 mouse 69617 Pitrm1 pitrilysin metallepetidase 1 NM_001360106.1 81.6% 86.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3177
ORF length:
3111
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatgtg gcgctgcggc gggcggcggg gcctgtgtgt gctgaggcgg ctgagcggcg
121gacatgcaca ccacagagcg tggcgatgga acagtaaccg ggcttgtgag agggctctgc
181agtataaact aggagacaag atccatggat tcaccgtaaa ccaggtgaca tctgttcccg
241agctgttcct gactgcagtg aagctcaccc atgatgacac aggagccagg tatttacacc
301tggccagaga agacacgaat aatctgttca gcgtgcagtt ccgtaccact cccatggaca
361gtactggtgt tcctcacatt cttgagcata ccgtcctttg tgggtctcag aaatatccgt
421gcagagaccc tttcttcaaa atgttgaacc ggtccctctc cacgttcatg aacgccttca
481cagctagtga ttatactctg tatccatttt ccacacaaaa tcccaaggac tttcagaatc
541tcctctcggt gtatttggat gccacctttt tcccatgttt acgcgagctg gatttctggc
601aggaaggatg gcggctggaa catgagaatc cgagcgaccc ccagacgccc ttggtcttta
661aaggagtcgt ctttaatgag atgaagggag cgtttacaga caatgagagg atattctccc
721agcaccttca gaacagactt cttcccgacc acacgtactc agtggtctcc gggggtgacc
781cactgtgcat cccggagctt acatgggagc agcttaagca gtttcatgcc actcactatc
841acccaagcaa tgctaggttc ttcacgtacg gtaattttcc attagaacag catctgaaac
901aaattcacga ggaagcactg agcaaattcc agaaaattga accaagcacc gtggtgccag
961ctcagacacc ctgggacaag cctagggaat tccagataac atgtggcccg gattcatttg
1021ctacagatcc ctctaaacaa acaaccgtca gcgttagctt cctcttaccg gacatcaccg
1081acacatttga agccttcaca ttaagtcttc tgtcttcact cttgacttct gggcccaatt
1141ctccctttta caaagccttg attgaatctg gccttggcac agacttttct cctgatgttg
1201gatataatgg ctacacgagg gaggcctact ttagtgtcgg cctccaaggg attgtggaga
1261aagacattga gaccgtcaga agcctcatag acagaacgat tgatgaagta gttgagaaag
1321gatttgaaga tgatcgaatt gaggctttac ttcataaaat tgaaatacag atgaaacatc
1381agtctaccag ctttgggctg atgctgacat catacatagc ttcttgctgg aaccatgatg
1441gggaccctgt ggagctcttg aagttgggaa atcagttagc taaattcaga cagtgcctgc
1501aggaaaatcc aaaatttttg caagaaaaag taaaacagta ttttaagaat aaccagcata
1561agctgacttt atcgatgagg ccagatgaca agtatcacga gaagcaggca caggtggaag
1621ccacgaagct caagcagaag gtcgaggctc tgtcccccgg agacaggcag cagatctacg
1681agaaaggtct agaattacgg agtcaacaaa gcaaacctca agatgcctct tgtctgccag
1741cgttgaaagt ttccgatatt gaacccacca tacctgtcac agagttggac gtggtcctga
1801cagctggaga tatccctgtt cagtactgcg cccagcccac caatggcatg gtgtatttcc
1861gggccttctc cagcctgaac acactccccg aggagctgag gccctatgtg cccctcttct
1921gcagcgtcct caccaagctg ggctgcggcc ttcttgacta ccgggagcag gctcagcaga
1981tagaattgaa gaccggaggg atgagtgctt ctccccacgt gctccccgac gactcacaca
2041tggacaccta cgagcagggt gtgcttttct cctctctctg cctggatcga aacctgccag
2101acatgatgca gctatggagt gaaatattta acaacccgtg ctttgaagaa gaggagcact
2161tcaaggtgct ggtgaagatg accgcccagg agctcgccaa tggaattcct gactctgggc
2221acctgtacgc atccatcagg gcaggccgga ccctcacgcc cgcaggggac ctgcaggaga
2281ccttcagcgg gatggatcag gtgcggctga tgaagaggat tgcagaaatg acagatatca
2341aacccatcct gaggaagctc ccacgtatca agaaacactt gttaaatggt gataatatga
2401ggtgttcagt gaatgcgact cctcagcaga tgcctcagac agaaaaagcg gtcgaagact
2461tccttagaag catcggtcgg agtaaaaagg aacggaggcc tgtgcgccca cacacggtcg
2521agaaacctgt gcccagcagc tctggtggag atgcccacgt tccccatggc tcccaggtca
2581ttaggaagct ggtcatggaa cccaccttca agccctggca gatgaagact cacttcctga
2641tgcccttccc ggtgaattac gtgggtgaat gcatccgaac tgtcccctac acggacccag
2701atcatgccag tcttaaaatc cttgcacgtt tgatgactgc caaattcttg catacagaaa
2761ttcgagaaaa aggcggtgct tatggtggag gcgcaaaact cagccacaat gggattttca
2821ccctttactc ttacagggac ccaaatacaa tagagacgct ccagtctttt gggaaggctg
2881tcgactgggc taagtctgga aaattcacac agcaagacat cgacgaagcc aaactttctg
2941tcttctcaac catagatgct cctgtcgctc cttcagacaa aggaatggac cacttcttgt
3001acggcctctc ggatgagatg aagcaggccc acagagagca gctctttgct gtcagccacg
3061acaagctcct ggccgtgagc gataggtacc tcggcactgg gaagagcaca cacggcctgg
3121ccatcctcgg acccgagaac ccgaaaattg ccaaggaccc atcctggatc atccgatnnc
3181caactttctt gtacaaagtt ggcattataa gaaagcattg cttatcaatt tgttgcaacg
3241aac

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