Construct: ORF ccsbBroadEn_15759

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003416.1_s300c1, BRDN0000386207
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SIK3 (23387)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23387 SIK3 SIK family kinase 3 XM_017017427.1 53.4% 52.6% (many diffs)
2 human 23387 SIK3 SIK family kinase 3 XM_005271485.3 50.1% 49.3% (many diffs)
3 human 23387 SIK3 SIK family kinase 3 XM_011542723.2 31.9% 31.4% (many diffs)
4 human 23387 SIK3 SIK family kinase 3 XM_011542724.2 31.9% 31.4% (many diffs)
5 human 23387 SIK3 SIK family kinase 3 XM_011542725.2 31.9% 31.4% (many diffs)
6 human 23387 SIK3 SIK family kinase 3 XM_017017425.1 31.9% 31.4% (many diffs)
7 human 23387 SIK3 SIK family kinase 3 XM_017017426.1 31.9% 31.4% (many diffs)
8 human 23387 SIK3 SIK family kinase 3 NM_025164.6 29.2% 28.7% (many diffs)
9 human 23387 SIK3 SIK family kinase 3 XM_005271482.4 29.2% 28.7% (many diffs)
10 human 23387 SIK3 SIK family kinase 3 NM_001366686.2 28.2% 27.7% (many diffs)
11 human 23387 SIK3 SIK family kinase 3 NM_001281748.3 28% 27.5% (many diffs)
12 human 23387 SIK3 SIK family kinase 3 XM_017017424.1 25.6% 25.1% (many diffs)
13 human 23387 SIK3 SIK family kinase 3 NM_001281749.3 24.6% 24.2% (many diffs)
14 human 23387 SIK3 SIK family kinase 3 XM_005271484.3 24.6% 24.2% (many diffs)
15 human 23387 SIK3 SIK family kinase 3 XM_011542722.1 23.8% 23.3% (many diffs)
16 mouse 70661 Sik3 SIK family kinase 3 XM_006510590.2 25.6% 25% (many diffs)
17 mouse 70661 Sik3 SIK family kinase 3 NM_027498.3 24.7% 24.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1236
ORF length:
1170
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatgca gcagcctgct cagtcacagc aggtcaccat ccaagtccaa gagcctgttg
121acatgctcag caacatgcca ggcacagctg caggctccag tgggcgcggc atctccatca
181gccccagtgc tggtcagatg cagatgcagc accgtaccaa cctgatggcc accctcagct
241atgggcaccg tcccttgtcc aagcagctga gtgctgacag tgcagaggct cacagcttga
301acgtgaatcg gttctcccct gctaactacg accaggcgca tttacacccc catctgtttt
361cggaccagtc ccggggttcc cccagcagct acagcccttc aacaggagtg gggttctctc
421caacccaagc cctgaaagtc cctccacttg accaattccc caccttccct cccagtgcac
481atcagcagcc gccacactat accacgtcgg cactacagca ggccctgctg tctcccacgc
541cgccagacta tacaagacac cagcaggtac cccacatcct tcaaggactg ctttctcccc
601ggcattcgct caccggccac tcggacatcc ggctgccccc aacagagttt gcacagctca
661ttaaaaggca gcagcaacaa cggcagcagc agcagcaaca gcagcaacag caagaatacc
721aggaactgtt caggcacatg aaccaagggg atgcggggag tctggctccc agccttgggg
781gacagagcat gacagagcgc caggctttat cttatcaaaa tgctgactct tatcaccatc
841acaccagccc ccagcatctg ctacaaatca gggcacaaga atgtgtctca caggcttcct
901cacccacccc gccccacggg tatgctcacc agccggcact gatgcattca gagagcatgg
961aggaggactg ctcgtgtgag ggggccaagg atggcttcca agacagtaag agttcaagta
1021cattgaccaa aggttgccat gacagccctc tgctcttgag taccggtgga cctggggacc
1081ctgaatcttt gctaggaact gtgagtcatg cccaagaatt ggggatacat ccctatggtc
1141atcagccaac tgctgcattc agtaaaaata aggtgcccag cagaggtaag tgtctcctca
1201cagtggaagt cctgggccag tctgccctaa tcaactnncc aactttcttg tacaaagttg
1261gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)