Construct: ORF ccsbBroadEn_15794

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011753.1_s300c1, BRDN0000390600
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF544 (27300)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 27300 ZNF544 zinc finger protein 544 NM_001320782.1 84.7% 72.8% (many diffs)
2 human 27300 ZNF544 zinc finger protein 544 NM_001320780.2 75% 65.9% (many diffs)
3 human 27300 ZNF544 zinc finger protein 544 NM_001320783.2 73.6% 46.4% (many diffs)
4 human 27300 ZNF544 zinc finger protein 544 NM_001320785.2 70.7% 47.5% (many diffs)
5 human 27300 ZNF544 zinc finger protein 544 NM_001320786.2 70.7% 47.5% (many diffs)
6 human 27300 ZNF544 zinc finger protein 544 NM_001320787.2 70.7% 47.5% (many diffs)
7 human 27300 ZNF544 zinc finger protein 544 NM_001320788.1 66.2% 50.4% (many diffs)
8 human 27300 ZNF544 zinc finger protein 544 NM_001320789.1 66.2% 50.4% (many diffs)
9 human 27300 ZNF544 zinc finger protein 544 NM_001320791.1 66.2% 50.4% (many diffs)
10 human 27300 ZNF544 zinc finger protein 544 NM_001320792.1 66.2% 50.4% (many diffs)
11 human 27300 ZNF544 zinc finger protein 544 XM_017026599.1 53.1% 47% (many diffs)
12 human 27300 ZNF544 zinc finger protein 544 NM_001320776.2 49.9% 32.4% (many diffs)
13 human 27300 ZNF544 zinc finger protein 544 NM_001320777.2 47.2% 32.9% (many diffs)
14 human 27300 ZNF544 zinc finger protein 544 XM_017026601.1 46.9% 34.4% (many diffs)
15 human 27300 ZNF544 zinc finger protein 544 XM_017026602.1 46.2% 34.5% (many diffs)
16 human 27300 ZNF544 zinc finger protein 544 XM_017026600.1 45.8% 34.2% (many diffs)
17 human 27300 ZNF544 zinc finger protein 544 XM_017026604.1 45.4% 33.3% (many diffs)
18 human 27300 ZNF544 zinc finger protein 544 NM_001320781.1 44.2% 33.9% (many diffs)
19 human 27300 ZNF544 zinc finger protein 544 XM_017026603.1 44.2% 33.9% (many diffs)
20 human 27300 ZNF544 zinc finger protein 544 XM_017026605.1 43.7% 32.7% 1_162del;321_322ins35;372_373ins73
21 human 27300 ZNF544 zinc finger protein 544 XR_001753665.2 25% (many diffs)
22 human 27300 ZNF544 zinc finger protein 544 NM_001320774.2 21.1% 17.9% (many diffs)
23 human 27300 ZNF544 zinc finger protein 544 NM_001320767.1 14% 11.2% (many diffs)
24 human 27300 ZNF544 zinc finger protein 544 NM_001320769.1 14% 11.2% (many diffs)
25 human 27300 ZNF544 zinc finger protein 544 NM_014480.3 14% 11.2% (many diffs)
26 human 27300 ZNF544 zinc finger protein 544 XM_011526738.2 13% 10.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
384
ORF length:
318
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatgga agcacgttct atgctggttc caccccaggc atctgtgtgc ttcgaggatg
121tggctatggc attcacacag gaggagtggg aacagctgga cctggcccag aggacactgt
181accgagaggt gacactggag acctgggagc atattgtctc cctggggctt ttcctttcca
241aatctgatgt gatctctcag ctggagcaag aagaggacct gtgcagggca gagcaggagg
301ccccccgagg tacttcaggt ctttcacaag tcacaggtgt agtggctgat gggagcttca
361ggttcccggt ctgggacttc acatnnccaa ctttcttgta caaagttggc attataagaa
421agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)