Construct: ORF ccsbBroadEn_15944
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008682.1_s300c1, BRDN0000394982
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF248 (57209)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57209 | ZNF248 | zinc finger protein 248 | NM_001352493.2 | 99.6% | 99% | 73C>G |
| 2 | human | 57209 | ZNF248 | zinc finger protein 248 | NM_001352494.2 | 99.6% | 99% | 73C>G |
| 3 | human | 57209 | ZNF248 | zinc finger protein 248 | XM_017016451.1 | 99.6% | 99% | 73C>G |
| 4 | human | 57209 | ZNF248 | zinc finger protein 248 | NM_001267605.1 | 92.7% | 91.5% | 73C>G;331_334delTGGAinsC;337_357del |
| 5 | human | 57209 | ZNF248 | zinc finger protein 248 | NM_001267606.1 | 92.7% | 91.5% | 73C>G;331_334delTGGAinsC;337_357del |
| 6 | human | 57209 | ZNF248 | zinc finger protein 248 | NM_001352477.2 | 92.7% | 91.5% | 73C>G;331_334delTGGAinsC;337_357del |
| 7 | human | 57209 | ZNF248 | zinc finger protein 248 | NM_001352478.1 | 92.7% | 91.5% | 73C>G;331_334delTGGAinsC;337_357del |
| 8 | human | 57209 | ZNF248 | zinc finger protein 248 | NM_001352479.2 | 92.7% | 91.5% | 73C>G;331_334delTGGAinsC;337_357del |
| 9 | human | 57209 | ZNF248 | zinc finger protein 248 | NM_001352480.1 | 92.7% | 91.5% | 73C>G;331_334delTGGAinsC;337_357del |
| 10 | human | 57209 | ZNF248 | zinc finger protein 248 | NM_001352481.2 | 92.7% | 91.5% | 73C>G;331_334delTGGAinsC;337_357del |
| 11 | human | 57209 | ZNF248 | zinc finger protein 248 | XM_011519599.1 | 92.7% | 91.5% | 73C>G;331_334delTGGAinsC;337_357del |
| 12 | human | 57209 | ZNF248 | zinc finger protein 248 | XM_011519600.2 | 92.7% | 91.5% | 73C>G;331_334delTGGAinsC;337_357del |
| 13 | human | 57209 | ZNF248 | zinc finger protein 248 | NM_001267607.3 | 90.1% | 89.3% | 73C>G;331_332insA;333_366del |
| 14 | human | 57209 | ZNF248 | zinc finger protein 248 | NM_001352476.2 | 90.1% | 89.3% | 73C>G;331_332insA;333_366del |
| 15 | human | 57209 | ZNF248 | zinc finger protein 248 | XM_017016448.1 | 78.7% | 75.5% | (many diffs) |
| 16 | human | 57209 | ZNF248 | zinc finger protein 248 | XR_001747154.1 | 28.4% | (many diffs) | |
| 17 | human | 57209 | ZNF248 | zinc finger protein 248 | XR_001747155.1 | 22.8% | (many diffs) | |
| 18 | human | 57209 | ZNF248 | zinc finger protein 248 | NR_147992.2 | 19% | (many diffs) | |
| 19 | human | 57209 | ZNF248 | zinc finger protein 248 | NM_001267597.1 | 18.9% | 18.8% | 73C>G;331_331delGinsCA;333_1737del |
| 20 | human | 57209 | ZNF248 | zinc finger protein 248 | NM_001352469.1 | 18.9% | 18.8% | 73C>G;331_331delGinsCA;333_1737del |
| 21 | human | 57209 | ZNF248 | zinc finger protein 248 | NM_001352470.1 | 18.9% | 18.8% | 73C>G;331_331delGinsCA;333_1737del |
| 22 | human | 57209 | ZNF248 | zinc finger protein 248 | NM_001352471.1 | 18.9% | 18.8% | 73C>G;331_331delGinsCA;333_1737del |
| 23 | human | 57209 | ZNF248 | zinc finger protein 248 | NM_001352472.1 | 18.9% | 18.8% | 73C>G;331_331delGinsCA;333_1737del |
| 24 | human | 57209 | ZNF248 | zinc finger protein 248 | NM_001352473.1 | 18.9% | 18.8% | 73C>G;331_331delGinsCA;333_1737del |
| 25 | human | 57209 | ZNF248 | zinc finger protein 248 | NM_001352474.1 | 18.9% | 18.8% | 73C>G;331_331delGinsCA;333_1737del |
| 26 | human | 57209 | ZNF248 | zinc finger protein 248 | NM_021045.2 | 18.9% | 18.8% | 73C>G;331_331delGinsCA;333_1737del |
| 27 | human | 57209 | ZNF248 | zinc finger protein 248 | XM_017016445.1 | 18.9% | 18.8% | 73C>G;331_331delGinsCA;333_1737del |
| 28 | human | 57209 | ZNF248 | zinc finger protein 248 | XM_017016444.1 | 17.9% | 17.1% | (many diffs) |
| 29 | human | 57209 | ZNF248 | zinc finger protein 248 | NR_148002.2 | 16.8% | (many diffs) | |
| 30 | human | 57209 | ZNF248 | zinc finger protein 248 | NR_148005.2 | 16.8% | (many diffs) | |
| 31 | human | 57209 | ZNF248 | zinc finger protein 248 | XR_001747146.1 | 16% | (many diffs) | |
| 32 | human | 57209 | ZNF248 | zinc finger protein 248 | NR_148007.2 | 15.5% | (many diffs) | |
| 33 | human | 57209 | ZNF248 | zinc finger protein 248 | XR_001747152.1 | 14.1% | (many diffs) | |
| 34 | human | 57209 | ZNF248 | zinc finger protein 248 | NR_147994.1 | 13.4% | (many diffs) | |
| 35 | human | 57209 | ZNF248 | zinc finger protein 248 | NR_148006.1 | 13% | (many diffs) | |
| 36 | human | 57209 | ZNF248 | zinc finger protein 248 | NR_147993.1 | 12.8% | 1_107del;180C>G;441_2575del | |
| 37 | human | 57209 | ZNF248 | zinc finger protein 248 | XR_001747153.1 | 12.1% | (many diffs) | |
| 38 | human | 57209 | ZNF248 | zinc finger protein 248 | NR_148004.1 | 11.8% | (many diffs) | |
| 39 | human | 57209 | ZNF248 | zinc finger protein 248 | XR_001747145.1 | 11.7% | (many diffs) | |
| 40 | human | 57209 | ZNF248 | zinc finger protein 248 | XR_001747151.1 | 11.7% | (many diffs) | |
| 41 | human | 57209 | ZNF248 | zinc finger protein 248 | NR_147998.1 | 11.6% | (many diffs) | |
| 42 | human | 57209 | ZNF248 | zinc finger protein 248 | XR_002956992.1 | 11.6% | (many diffs) | |
| 43 | human | 57209 | ZNF248 | zinc finger protein 248 | XR_001747149.1 | 11.3% | (many diffs) | |
| 44 | human | 57209 | ZNF248 | zinc finger protein 248 | NR_147991.1 | 11.1% | (many diffs) | |
| 45 | human | 57209 | ZNF248 | zinc finger protein 248 | XR_001747156.1 | 10.9% | (many diffs) | |
| 46 | human | 57209 | ZNF248 | zinc finger protein 248 | NR_147995.1 | 10.9% | (many diffs) | |
| 47 | human | 57209 | ZNF248 | zinc finger protein 248 | XR_001747147.1 | 10.8% | (many diffs) | |
| 48 | human | 57209 | ZNF248 | zinc finger protein 248 | NR_148003.2 | 10.8% | 1_453del;526C>G;787_3071del | |
| 49 | human | 57209 | ZNF248 | zinc finger protein 248 | NR_147996.2 | 10.7% | (many diffs) | |
| 50 | human | 57209 | ZNF248 | zinc finger protein 248 | NR_147997.2 | 10.4% | 1_453del;526C>G;787_3169del | |
| 51 | human | 57209 | ZNF248 | zinc finger protein 248 | XR_002956993.1 | 10.1% | (many diffs) | |
| 52 | human | 57209 | ZNF248 | zinc finger protein 248 | XR_002956994.1 | 9.4% | 1_227del;300C>G;561_3514del | |
| 53 | human | 57209 | ZNF248 | zinc finger protein 248 | XR_001747150.1 | 9.2% | (many diffs) | |
| 54 | human | 57209 | ZNF248 | zinc finger protein 248 | XR_001747148.1 | 9.2% | (many diffs) | |
| 55 | human | 57209 | ZNF248 | zinc finger protein 248 | XR_930496.1 | 8.8% | (many diffs) | |
| 56 | human | 57209 | ZNF248 | zinc finger protein 248 | NR_147999.2 | 8.3% | (many diffs) | |
| 57 | human | 57209 | ZNF248 | zinc finger protein 248 | NR_148000.2 | 8.1% | (many diffs) | |
| 58 | human | 57209 | ZNF248 | zinc finger protein 248 | NR_148001.2 | 8.1% | (many diffs) | |
| 59 | mouse | 72720 | Zfp248 | zinc finger protein 248 | NM_028335.2 | 16.3% | 15.3% | (many diffs) |
| 60 | mouse | 72720 | Zfp248 | zinc finger protein 248 | XM_006506676.2 | 16.3% | 15.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 402
- ORF length:
- 333
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcaccat gaacaaatcc caggaacaag tgtcattcaa ggatgtatgt gtggacttca 121 ctcaggaaga gtggtatctg gtggaccctg ctcagaagat tctatacaga gatgtgatcc 181 tggaaaatta tagcaatctt gtctcagtag ggtattgcat tactaaacca gaagtgatct 241 ttaagatcga gcaaggagaa gagccctgga tattagaaaa aggattccca agccagtgcc 301 acccagaaag gaaatggaaa gttgatgacg tgttagagag cagccaggaa aatgaagatg 361 accatttttg ggagcttcta ttccacaaca acaaaacaca ttnnccaact ttcttgtaca 421 aagttggcat tataagaaag cattgcttat caatttgttg caacgaac