Construct: ORF ccsbBroadEn_15991
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009818.1_s300c1, BRDN0000385986
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- HHIPL2 (79802)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79802 | HHIPL2 | HHIP like 2 | XM_017002350.1 | 52.6% | 52.6% | 1_585del;1354_1458del |
| 2 | human | 79802 | HHIPL2 | HHIP like 2 | XM_011509986.1 | 40.7% | 40.7% | 1_585del;1354_1884del |
| 3 | human | 79802 | HHIPL2 | HHIP like 2 | NM_024746.4 | 35.3% | 35.3% | 1_585del;1354_2172del |
| 4 | human | 79802 | HHIPL2 | HHIP like 2 | XM_024449814.1 | 34.4% | 34.4% | 1_585del;1354_2229del |
| 5 | mouse | 78772 | Hhipl2 | hedgehog interacting protei... | NM_001308052.1 | 38.5% | 39.3% | (many diffs) |
| 6 | mouse | 78772 | Hhipl2 | hedgehog interacting protei... | XM_011249736.2 | 38% | 38.9% | (many diffs) |
| 7 | mouse | 78772 | Hhipl2 | hedgehog interacting protei... | XM_011249737.2 | 38% | 38.9% | (many diffs) |
| 8 | mouse | 78772 | Hhipl2 | hedgehog interacting protei... | XM_017312944.1 | 38% | 38.9% | (many diffs) |
| 9 | mouse | 78772 | Hhipl2 | hedgehog interacting protei... | XM_011249734.2 | 34.8% | 35.6% | (many diffs) |
| 10 | mouse | 78772 | Hhipl2 | hedgehog interacting protei... | XM_011249735.2 | 34.8% | 35.6% | (many diffs) |
| 11 | mouse | 78772 | Hhipl2 | hedgehog interacting protei... | NM_030175.5 | 31% | 31.7% | (many diffs) |
| 12 | mouse | 78772 | Hhipl2 | hedgehog interacting protei... | XM_011249733.2 | 30.8% | 31.5% | (many diffs) |
| 13 | mouse | 78772 | Hhipl2 | hedgehog interacting protei... | XR_880811.1 | 24.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 834
- ORF length:
- 768
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatggt ggcccaagat cctcagggct gcctgcagct ctgcctgagc gaggtggcca 121 acgggctgag gaaccccgtc tccatggtcc atgctgggga cggcacccat cgcttctttg 181 ttgccgagca ggtaggagtg gtgtgggtct acctccctga tgggagtcgc ctggagcaac 241 ccttcctgga cctcaagaac atcgtgttga ccaccccatg gatcggggat gagagaggct 301 tcttggggtt ggcttttcac cccaaattcc gccacaatcg caagttctat atttattatt 361 cgtgcctgga caagaagaag gtagaaaaga tccgaattag tgagatgaag gtttctcggg 421 ctgatcctaa caaagctgac ctgaaatcag agagggtcat cttggagatt gaagaaccag 481 cctcaaacca taatggcgga caacttcttt ttggcctgga tggctatatg tacatattca 541 ctggggacgg gggacaggct ggagatccct ttggcctgtt tggaaatgct cagaacaaaa 601 gttccctgct gggaaaagtt ttaaggatcg atgtgaacag ggcaggctca catggcaagc 661 ggtaccgagt cccctcggac aatccatttg tttctgagcc aggggcccac cccgccatct 721 atgcctatgg gatcaggaac atgtggcgtt gtgctgtgga ccgaggggac cccatcacgc 781 gccagggccg aggccggata ttctgtgggg acgtgggcca gaacaggttt gaatnnccaa 841 ctttcttgta caaagttggc attataagaa agcattgctt atcaatttgt tgcaacgaac