Construct: ORF ccsbBroadEn_16073

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014993.1_s300c1, BRDN0000394351
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNX18 (112574)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 112574 SNX18 sorting nexin 18 NM_001102575.2 99.8% 100% 270T>C;612T>C
2 human 112574 SNX18 sorting nexin 18 NM_001145427.2 90.5% 83.6% (many diffs)
3 human 112574 SNX18 sorting nexin 18 NM_052870.3 88.9% 84% (many diffs)
4 human 112574 SNX18 sorting nexin 18 XM_017008997.1 86.5% 86.6% 270T>C;612T>C;1623_1623delTins250
5 human 112574 SNX18 sorting nexin 18 XR_001741987.1 52.2% (many diffs)
6 mouse 170625 Snx18 sorting nexin 18 NM_130796.4 89.5% 95.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1941
ORF length:
1872
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcaccat ggcgctgcgc gcccgggcgc tgtacgactt caggtcggag aacccaggag
121agatctcgct gcgagagcac gaggtgctga gcctgtgcag cgagcaggac atcgagggct
181ggctcgaggg ggtcaacagc cgcggcgacc gcggcctctt cccggcctcc tatgtgcagg
241tgatccgcgc ccccgagcct ggcccggcgg gagacggcgg cccgggcgcc ccggcccgct
301acgccaatgt gccccccggg ggcttcgagc ccctgcccgt cgcgcccccc gcctccttca
361agccgccgcc tgacgccttc caggcgctgc tgcagccaca gcaggcgccg cctccgagca
421ccttccagcc gcccggcgcg ggcttcccgt acggcggggg cgccctgcag ccgtcgcctc
481agcagctcta cggcggctac caggccagcc aaggcagcga tgatgactgg gacgacgagt
541gggacgacag ctccacggtg gcggacgagc cgggcgctct gggcagcgga gcatacccgg
601acctcgacgg ctcgtcttcg gcgggtgtgg gcgcagccgg ccgctaccgc ctgtccacgc
661gctccgacct gtccctgggc tcccgcggcg gctcggtccc cccgcagcac cacccgtcgg
721ggcccaagag ctcggccacc gtgagccgca acctcaatcg cttctccacc ttcgtcaagt
781ccggcgggga ggccttcgtg ctgggggagg cgtcaggctt cgtgaaggac ggggacaagc
841tgtgcgtggt gctggggccc tatggccccg agtggcagga gaacccctac ccgttccagt
901gcaccatcga cgaccccacc aagcagacca agttcaaggg catgaagagc tacatctcct
961acaagctggt gcccacgcac acgcaggtgc cggtgcatcg gcgctacaag cacttcgact
1021ggctgtacgc gcgcctggcg gagaagttcc cggtcatctc cgtgccccac ctgcccgaga
1081agcaggccac cggccgcttc gaggaggact tcatctctaa gcgcaggaag ggcctgatct
1141ggtggatgaa ccacatggcc agccacccag tgctggcgca gtgcgacgtc ttccagcact
1201tcctgacgtg ccccagcagc accgacgaga aagcctggaa gcagggcaag aggaaggccg
1261agaaggacga gatggtgggc gccaacttct tcctgaccct tagcacgccc cccgccgctg
1321cccttgacct gcaggaggtg gagagcaaga tcgacggctt caagtgcttc accaagaaga
1381tggacgacag cgcgctgcag ctcaaccaca cggccaacga gttcgcgcgc aagcaggtga
1441ccggcttcaa aaaggagtat cagaaggtgg gccagtcctt ccgcggcctc agccaggcct
1501ttgagctgga ccagcaggcc ttctcggtgg gcctgaacca ggctatcgcc ttcaccggag
1561atgcctatga cgccattggc gagctcttcg cggagcagcc caggcaggac ctggatcccg
1621tcatggacct attagcgctg tatcaggggc atctggctaa cttcccggac atcatccacg
1681ttcagaaagg agctcttacc aaagtcaagg agagtaggcg acacgtggag gaagggaaga
1741tggaggtgca gaaggctgac ggcattcagg atcgctgtaa cactatttct tttgccactt
1801tggctgaaat tcaccacttc catcaaattc gagtgagaga ctttaaatca cagatgcagc
1861atttcttaca acaacaaata atatttttcc aaaaagttac ccagaagttg gaagaagctc
1921ttcacaaata tgatagtgtt tnnccaactt tcttgtacaa agttggcatt ataagaaagc
1981attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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