Transcript: Human NM_001004065.4

Homo sapiens PALM2 and AKAP2 fusion (PALM2AKAP2), transcript variant 5, mRNA.

Source:
NCBI, updated 2019-07-21
Taxon:
Homo sapiens (human)
Gene:
PALM2AKAP2 (445815)
Length:
6977
CDS:
103..2949

Additional Resources:

NCBI RefSeq record:
NM_001004065.4
NBCI Gene record:
PALM2AKAP2 (445815)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001004065.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000157791 CAGCGGACTTTGTCCATGATT pLKO.1 2515 CDS 100% 5.625 7.875 N n/a
2 TRCN0000156297 CGCGAGAGAATGGATGATAGT pLKO.1 2827 CDS 100% 4.950 6.930 N n/a
3 TRCN0000117125 CGCGCAAGCATGATTGACAAA pLKO.1 1282 CDS 100% 4.950 6.930 N PALM2AKAP2 n/a
4 TRCN0000158049 CGCGCAAGCATGATTGACAAA pLKO.1 1282 CDS 100% 4.950 6.930 N n/a
5 TRCN0000117123 GCATCCAATGAGACAACCAAT pLKO.1 1882 CDS 100% 4.950 6.930 N PALM2AKAP2 n/a
6 TRCN0000153143 GCATCCAATGAGACAACCAAT pLKO.1 1882 CDS 100% 4.950 6.930 N n/a
7 TRCN0000153591 CACTCAAGAATCTGACGTGAT pLKO.1 2463 CDS 100% 4.050 5.670 N n/a
8 TRCN0000181080 CGCTATCTAGATGAGGTGCTA pLKO.1 529 CDS 100% 2.640 2.112 N n/a
9 TRCN0000117122 GCAGTTTATGAGAACACATTT pLKO.1 3699 3UTR 100% 13.200 9.240 N PALM2AKAP2 n/a
10 TRCN0000179410 CCAGTGTGTTTCAGGATGATA pLKO.1 4109 3UTR 100% 5.625 3.938 N n/a
11 TRCN0000026876 CTGGTGCAGAATGCCATTCAA pLKO.1 2086 CDS 100% 5.625 3.938 N Akap2 n/a
12 TRCN0000180464 GCTGTGGATGGAACGTACAAT pLKO.1 571 CDS 100% 5.625 3.938 N n/a
13 TRCN0000157975 CCACACGGGTTAATCGAAGAA pLKO.1 2861 CDS 100% 4.950 3.465 N n/a
14 TRCN0000158333 CGTCAAGAAGAATCCTGGCAT pLKO.1 1059 CDS 100% 2.640 1.848 N n/a
15 TRCN0000156405 CCCTTATCTAAACTGTGGGCT pLKO.1 1645 CDS 100% 0.660 0.462 N n/a
16 TRCN0000157511 GTGGTCAAGGATGATGACCAT pLKO.1 1705 CDS 100% 0.264 0.185 N n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001004065.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.