Transcript: Human NM_001005190.1

Homo sapiens olfactory receptor family 7 subfamily A member 10 (OR7A10), mRNA.

Source:
NCBI, updated 2019-09-21
Taxon:
Homo sapiens (human)
Gene:
OR7A10 (390892)
Length:
930
CDS:
1..930

Additional Resources:

NCBI RefSeq record:
NM_001005190.1
NBCI Gene record:
OR7A10 (390892)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001005190.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000187119 CCAGACACACAACAAAGTCAT pLKO.1 255 CDS 100% 4.950 2.970 N OR7A10 n/a
2 TRCN0000188409 CCTCTGCACTACATGGTCATT pLKO.1 385 CDS 100% 4.950 2.970 N OR7A10 n/a
3 TRCN0000189118 GCATCCTGGATCATGAGTGTT pLKO.1 439 CDS 100% 4.950 2.970 N OR7A10 n/a
4 TRCN0000009438 AGTTTCCTCCATACGTGCAAT pLKO.1 663 CDS 100% 4.950 2.475 Y OR7A17 n/a
5 TRCN0000187162 CACCTCTCAGTTGTCTCCTTA pLKO.1 730 CDS 100% 4.950 2.475 Y Olfr57 n/a
6 TRCN0000197365 CCTCCATACGTGCAATCTCAT pLKO.1 668 CDS 100% 4.950 2.475 Y OR7A10 n/a
7 TRCN0000185906 GACACCTTTCTTAATGACATA pLKO.1 571 CDS 100% 4.950 2.475 Y OR7A10 n/a
8 TRCN0000186114 CCATACGTGCAATCTCATCAT pLKO.1 671 CDS 100% 4.950 2.475 Y Olfr19 n/a
9 TRCN0000009348 CCCATGTACTTCTTCCTCTCA pLKO.1 172 CDS 100% 2.640 1.320 Y OR2A4 n/a
10 TRCN0000189182 CCCATGTACTTCTTCCTCTCT pLKO.1 172 CDS 100% 2.640 1.320 Y Olfr444 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001005190.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02957 pDONR223 100% 87% 82.5% None (many diffs) n/a
2 ccsbBroad304_02957 pLX_304 0% 87% 82.5% V5 (many diffs) n/a
3 TRCN0000467319 CACTAATCTAATCTTCGCCGCAAA pLX_317 32.8% 87% 82.5% V5 (many diffs) n/a
4 ccsbBroadEn_08034 pDONR223 100% 84.6% 78% None (many diffs) n/a
5 ccsbBroad304_08034 pLX_304 0% 84.6% 78% V5 (many diffs) n/a
6 TRCN0000476174 CTCAACAGGGGAATCCGTTACGGA pLX_317 33.4% 84.6% 78% V5 (many diffs) n/a
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