Transcript: Human NM_001031684.3

Homo sapiens serine and arginine rich splicing factor 7 (SRSF7), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-06-08
Taxon:
Homo sapiens (human)
Gene:
SRSF7 (6432)
Length:
2356
CDS:
106..822

Additional Resources:

NCBI RefSeq record:
NM_001031684.3
NBCI Gene record:
SRSF7 (6432)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001031684.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000001142 GAACTGTATGGATTGCGAGAA pLKO.1 218 CDS 100% 4.050 5.670 N SRSF7 n/a
2 TRCN0000273460 GAACTGTATGGATTGCGAGAA pLKO_005 218 CDS 100% 4.050 5.670 N SRSF7 n/a
3 TRCN0000001140 CGCTAGTATGTTGGAAGTTAT pLKO.1 2172 3UTR 100% 13.200 10.560 N SRSF7 n/a
4 TRCN0000273401 GATCAAGATCCAGGTCTATTT pLKO_005 695 CDS 100% 13.200 9.240 N SRSF7 n/a
5 TRCN0000273403 AGATCCTTAAGTTAGCTAATC pLKO_005 1312 3UTR 100% 10.800 7.560 N SRSF7 n/a
6 TRCN0000273400 CCTCGACGATCAAGATCTATC pLKO_005 583 CDS 100% 10.800 7.560 N SRSF7 n/a
7 TRCN0000273402 GTCACGGTCTAGATCACATTC pLKO_005 492 CDS 100% 10.800 7.560 N SRSF7 n/a
8 TRCN0000001143 AGGACTGGATGGAAAGGTGAT pLKO.1 300 CDS 100% 4.050 2.835 N SRSF7 n/a
9 TRCN0000001141 GATGCTATGAGTGTGGCGAAA pLKO.1 419 CDS 100% 4.050 2.835 N SRSF7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001031684.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01525 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_01525 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000467489 GCCCAGCAACTTAAATCGTCGGAT pLX_317 50.4% 100% 100% V5 n/a
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