Transcript: Human NM_001031835.3

Homo sapiens phosphorylase kinase regulatory subunit beta (PHKB), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Homo sapiens (human)
Gene:
PHKB (5257)
Length:
5571
CDS:
154..3414

Additional Resources:

NCBI RefSeq record:
NM_001031835.3
NBCI Gene record:
PHKB (5257)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

Clone ID Target Seq Vector PAM Seq Cut Position Cut % of CDS Length Exon On Target Score[?] Other Matching Genes Orig. Target Gene[?] Notes Addgene[?]
1 BRDN0001149204 TGAGTACCTTTGATGTCCCG pXPR_003 AGG 1661 51% 18 0.258 PHKB PHKB 77846
2 BRDN0001148967 ATCAACGTAACGTGAGCATG pXPR_003 AGG 1419 44% 15 -0.1129 PHKB PHKB 77845
3 BRDN0001144975 TTTCCCACTAAAACATGCGG pXPR_003 TGG 206 6% 4 -0.6763 PHKB PHKB 77847
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shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001031835.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000197195 GCATGTCATAGCCAATCTAAC pLKO.1 3563 3UTR 100% 10.800 15.120 N PHKB n/a
2 TRCN0000006196 CGCTGCATGTTGTATGATCAA pLKO.1 3693 3UTR 100% 4.950 6.930 N PHKB n/a
3 TRCN0000196396 GCAGCCATTAATATACGAACT pLKO.1 3490 3UTR 100% 4.050 5.670 N PHKB n/a
4 TRCN0000006199 CCTGTCAGATATGACCATGTA pLKO.1 3036 CDS 100% 4.950 3.960 N PHKB n/a
5 TRCN0000194723 CAGCTGAAATTAAGCTATTTG pLKO.1 1187 CDS 100% 13.200 9.240 N PHKB n/a
6 TRCN0000195235 CTCATGATTATGCCAACTATA pLKO.1 3622 3UTR 100% 13.200 9.240 N PHKB n/a
7 TRCN0000196687 GACTGGTCAAAGAAGCATTTA pLKO.1 3209 CDS 100% 13.200 9.240 N PHKB n/a
8 TRCN0000196867 GAACTTCTCTTAGTGGTATTG pLKO.1 3830 3UTR 100% 10.800 7.560 N PHKB n/a
9 TRCN0000195461 GCTTAATCAAGGCAGCCATTA pLKO.1 3479 3UTR 100% 10.800 7.560 N PHKB n/a
10 TRCN0000006198 CCAGAGAATCAAGATCACATA pLKO.1 983 CDS 100% 4.950 3.465 N PHKB n/a
11 TRCN0000006197 GCTCAGTTTATGAACCTCTTA pLKO.1 209 CDS 100% 4.950 3.465 N PHKB n/a
12 TRCN0000006200 CCCAACTTCATCACAAAGGAA pLKO.1 2389 CDS 100% 3.000 2.100 N PHKB n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001031835.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14754 pDONR223 0% 99.9% 100% None 297T>C;2154C>T n/a
2 ccsbBroad304_14754 pLX_304 0% 99.9% 100% V5 297T>C;2154C>T n/a
3 TRCN0000474290 CTTATGACAAAAGCCCCCCGACTC pLX_317 13.7% 99.9% 100% V5 297T>C;2154C>T n/a
4 ccsbBroadEn_14753 pDONR223 74.1% 99.8% 99.7% None (many diffs) n/a
5 ccsbBroad304_14753 pLX_304 0% 99.8% 99.7% V5 (many diffs) n/a
6 TRCN0000478777 TGTCCCTAGTTAATCGCTATTCCA pLX_317 9.7% 99.8% 99.7% V5 (many diffs) n/a
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