Transcript: Human NM_001032295.2

Homo sapiens serpin family G member 1 (SERPING1), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-16
Taxon:
Homo sapiens (human)
Gene:
SERPING1 (710)
Length:
1830
CDS:
61..1563

Additional Resources:

NCBI RefSeq record:
NM_001032295.2
NBCI Gene record:
SERPING1 (710)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001032295.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000003484 CCTGAAACATCGTCTTGAAGA pLKO.1 1146 CDS 100% 4.950 6.930 N SERPING1 n/a
2 TRCN0000373450 GCCAAGTGGAAGACAACATTT pLKO_005 949 CDS 100% 13.200 9.240 N SERPING1 n/a
3 TRCN0000373451 AGTTATCTCCAAGATGCTATT pLKO_005 204 CDS 100% 10.800 7.560 N SERPING1 n/a
4 TRCN0000373515 GGGATAGAGCCTCCTCAAATC pLKO_005 110 CDS 100% 10.800 7.560 N SERPING1 n/a
5 TRCN0000003483 CAGCCCACTCTCCTAACACTA pLKO.1 1234 CDS 100% 4.950 3.465 N SERPING1 n/a
6 TRCN0000003486 CCATGCTCTCCAAACCACTTT pLKO.1 1750 3UTR 100% 4.950 3.465 N SERPING1 n/a
7 TRCN0000003485 CCTCCTCAATGCTATCTACCT pLKO.1 924 CDS 100% 2.640 1.848 N SERPING1 n/a
8 TRCN0000010794 CTGAGTTTGGTGATCCTGGTA pLKO.1 1117 CDS 100% 2.640 1.848 N SERPING1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001032295.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05910 pDONR223 100% 99.9% 99.8% None 1438G>A n/a
2 ccsbBroad304_05910 pLX_304 0% 99.9% 99.8% V5 1438G>A n/a
3 TRCN0000474597 TATTGGAGCCTTCCCACGGCGGAC pLX_317 26.9% 99.9% 99.8% V5 1438G>A n/a
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