Transcript: Mouse NM_001037136.1

Mus musculus ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 (Agap1), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
Agap1 (347722)
Length:
9422
CDS:
620..3034

Additional Resources:

NCBI RefSeq record:
NM_001037136.1
NBCI Gene record:
Agap1 (347722)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001037136.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000381878 CAAGAATAAGTCCCGACTAAC pLKO_005 2251 CDS 100% 10.800 15.120 N Agap1 n/a
2 TRCN0000106027 GCAAGAATAAGTCCCGACTAA pLKO.1 2250 CDS 100% 4.950 6.930 N Agap1 n/a
3 TRCN0000106025 GCTGTTTAATAGAACGTGATT pLKO.1 3593 3UTR 100% 4.950 3.960 N Agap1 n/a
4 TRCN0000158851 GCTGTTTAATAGAACGTGATT pLKO.1 3593 3UTR 100% 4.950 3.960 N AGAP1 n/a
5 TRCN0000281187 GCTGTTTAATAGAACGTGATT pLKO_005 3593 3UTR 100% 4.950 3.960 N AGAP1 n/a
6 TRCN0000316909 GCTGTTTAATAGAACGTGATT pLKO_005 3593 3UTR 100% 4.950 3.960 N Agap1 n/a
7 TRCN0000106026 GCCAAGGACATGAGCAGTTTA pLKO.1 1904 CDS 100% 13.200 9.240 N Agap1 n/a
8 TRCN0000106029 AGTTTACACATCTCACCAAAT pLKO.1 1919 CDS 100% 10.800 7.560 N Agap1 n/a
9 TRCN0000316845 AGTTTACACATCTCACCAAAT pLKO_005 1919 CDS 100% 10.800 7.560 N Agap1 n/a
10 TRCN0000305184 CAAGCGCAGGTCCAACCTATT pLKO_005 1552 CDS 100% 10.800 7.560 N Agap1 n/a
11 TRCN0000379964 TGAAGAGGTGCACGTACTATG pLKO_005 1224 CDS 100% 10.800 7.560 N Agap1 n/a
12 TRCN0000106028 CCAGACTGTCTACCATTACTA pLKO.1 1075 CDS 100% 5.625 3.938 N Agap1 n/a
13 TRCN0000316844 CCAGACTGTCTACCATTACTA pLKO_005 1075 CDS 100% 5.625 3.938 N Agap1 n/a
14 TRCN0000375071 AGAGTTATCTGCTGCTGATTA pLKO_005 966 CDS 100% 13.200 7.920 N Agap1 n/a
15 TRCN0000100190 CCCAACATCTACTCCATCTAT pLKO.1 692 CDS 100% 5.625 2.813 Y BC025446 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001037136.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.