Transcript: Mouse NM_001038643.1

Mus musculus solute carrier organic anion transporter family, member 3a1 (Slco3a1), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
Slco3a1 (108116)
Length:
2857
CDS:
191..2269

Additional Resources:

NCBI RefSeq record:
NM_001038643.1
NBCI Gene record:
Slco3a1 (108116)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001038643.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000079256 CCCGGACCTAATCTGCCGTAA pLKO.1 676 CDS 100% 1.350 1.890 N Slco3a1 n/a
2 TRCN0000079257 GCGGTCTTCATTGACACAAGT pLKO.1 917 CDS 100% 4.950 3.960 N Slco3a1 n/a
3 TRCN0000339946 TGATGTACTTGCTGCTTATTG pLKO_005 714 CDS 100% 13.200 9.240 N Slco3a1 n/a
4 TRCN0000351044 CCTGTGTCCTCTACGACAATG pLKO_005 2028 CDS 100% 10.800 7.560 N Slco3a1 n/a
5 TRCN0000339947 CTGATTCTCTTCGTAAGTTAC pLKO_005 464 CDS 100% 10.800 7.560 N Slco3a1 n/a
6 TRCN0000043264 CGGTCTTCATTGACACAAGTA pLKO.1 918 CDS 100% 4.950 3.465 N SLCO3A1 n/a
7 TRCN0000307638 CGGTCTTCATTGACACAAGTA pLKO_005 918 CDS 100% 4.950 3.465 N SLCO3A1 n/a
8 TRCN0000079253 GCTCCTTCGTTTGTTGGGTTT pLKO.1 1927 CDS 100% 4.050 2.835 N Slco3a1 n/a
9 TRCN0000079254 GCTCTACATAGGAATCCTGTT pLKO.1 826 CDS 100% 4.050 2.835 N Slco3a1 n/a
10 TRCN0000079255 GTGGATTTATTCTGGGCTCTT pLKO.1 873 CDS 100% 4.050 2.835 N Slco3a1 n/a
11 TRCN0000339949 TGTTCACGATGTTGGTATTTG pLKO_005 843 CDS 100% 13.200 6.600 Y Slco3a1 n/a
12 TRCN0000043267 CTGGGCTCTTTCTGTACCAAA pLKO.1 884 CDS 100% 4.950 3.465 N SLCO3A1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001038643.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08091 pDONR223 100% 90.6% 97.8% None (many diffs) n/a
2 ccsbBroad304_08091 pLX_304 0% 90.6% 97.8% V5 (many diffs) n/a
3 TRCN0000477005 GATGTGAAGCCACAGACAAATGGC pLX_317 16.7% 90.6% 97.8% V5 (many diffs) n/a
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