Transcript: Human NM_001040455.2

Homo sapiens SID1 transmembrane family member 2 (SIDT2), mRNA.

Source:
NCBI, updated 2019-06-30
Taxon:
Homo sapiens (human)
Gene:
SIDT2 (51092)
Length:
4396
CDS:
522..3020

Additional Resources:

NCBI RefSeq record:
NM_001040455.2
NBCI Gene record:
SIDT2 (51092)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001040455.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000154021 CCAGTTTGACACATCGTTCAT pLKO.1 2249 CDS 100% 4.950 6.930 N SIDT2 n/a
2 TRCN0000285471 CCAGTTTGACACATCGTTCAT pLKO_005 2249 CDS 100% 4.950 6.930 N SIDT2 n/a
3 TRCN0000154309 CGCACCAAGCAATACCTCTAT pLKO.1 1791 CDS 100% 4.950 6.930 N SIDT2 n/a
4 TRCN0000275984 CGCACCAAGCAATACCTCTAT pLKO_005 1791 CDS 100% 4.950 6.930 N SIDT2 n/a
5 TRCN0000275983 GAGGATGACTACGACACATTG pLKO_005 1740 CDS 100% 10.800 8.640 N SIDT2 n/a
6 TRCN0000276025 CCTGAATCTCTGTCCTGTATC pLKO_005 3467 3UTR 100% 10.800 7.560 N SIDT2 n/a
7 TRCN0000151482 CAGATCTACTTCTGGAACATT pLKO.1 1860 CDS 100% 5.625 3.938 N SIDT2 n/a
8 TRCN0000152873 GTGTTAGTCATGCACACACAT pLKO.1 4078 3UTR 100% 4.950 3.465 N SIDT2 n/a
9 TRCN0000150375 CACACATACCTATGAAACCTT pLKO.1 4092 3UTR 100% 3.000 2.100 N SIDT2 n/a
10 TRCN0000153874 CCAGATCTACTTCTGGAACAT pLKO.1 1859 CDS 100% 0.495 0.347 N SIDT2 n/a
11 TRCN0000151968 CCAGTACTTCAAGTATGAGTT pLKO.1 1034 CDS 100% 4.950 2.970 N SIDT2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001040455.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11947 pDONR223 100% 98.6% 98.5% None 532T>C;1014_1015insGCTTCTCTCCTT;1159_1179del n/a
2 ccsbBroad304_11947 pLX_304 0% 98.6% 98.5% V5 532T>C;1014_1015insGCTTCTCTCCTT;1159_1179del n/a
3 TRCN0000467022 TGCTTCTGCTGGGTACGCTTGCTA pLX_317 10.2% 98.6% 98.5% V5 532T>C;1014_1015insGCTTCTCTCCTT;1159_1179del n/a
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