Transcript: Mouse NM_001079830.2

Mus musculus tripartite motif-containing 33 (Trim33), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-06-04
Taxon:
Mus musculus (mouse)
Gene:
Trim33 (94093)
Length:
8819
CDS:
587..3958

Additional Resources:

NCBI RefSeq record:
NM_001079830.2
NBCI Gene record:
Trim33 (94093)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001079830.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000311090 ACCTCTATTGTCACGAATTAA pLKO_005 3540 CDS 100% 15.000 21.000 N Trim33 n/a
2 TRCN0000311091 CGGACTTAAATCGGTTGTTAA pLKO_005 3966 3UTR 100% 13.200 18.480 N Trim33 n/a
3 TRCN0000322586 GATGCTGGCTCAAGTAGTTTA pLKO_005 2693 CDS 100% 13.200 18.480 N TRIM33 n/a
4 TRCN0000039530 CGTGTGATAGATTGACGTGTA pLKO.1 1497 CDS 100% 4.050 5.670 N Trim33 n/a
5 TRCN0000302197 CGTGTGATAGATTGACGTGTA pLKO_005 1497 CDS 100% 4.050 5.670 N Trim33 n/a
6 TRCN0000022006 GCTCCTGGTTATACTCCTAAT pLKO.1 2075 CDS 100% 10.800 8.640 N TRIM33 n/a
7 TRCN0000304616 TCGATACCAAACTACTATAAA pLKO_005 3590 CDS 100% 15.000 10.500 N Trim33 n/a
8 TRCN0000322687 TCGATACCAAACTACTATAAA pLKO_005 3590 CDS 100% 15.000 10.500 N TRIM33 n/a
9 TRCN0000196330 GCTCAAGTAGTTTAGATAATC pLKO.1 2700 CDS 100% 13.200 9.240 N TRIM33 n/a
10 TRCN0000039529 CGTCTGTTACAGCAATAGAAT pLKO.1 2604 CDS 100% 5.625 3.938 N Trim33 n/a
11 TRCN0000022005 GCAGTTGCATTGTACTTTGAA pLKO.1 3776 CDS 100% 5.625 3.938 N TRIM33 n/a
12 TRCN0000322585 GCAGTTGCATTGTACTTTGAA pLKO_005 3776 CDS 100% 5.625 3.938 N TRIM33 n/a
13 TRCN0000039532 CCACCTATACAGTTGGAAGAT pLKO.1 2675 CDS 100% 4.950 3.465 N Trim33 n/a
14 TRCN0000039533 GCAGCTACACAAGTGCAGAAT pLKO.1 1646 CDS 100% 4.950 3.465 N Trim33 n/a
15 TRCN0000039531 GCTCATAGTTTCAAGTCTGAT pLKO.1 2918 CDS 100% 4.950 3.465 N Trim33 n/a
16 TRCN0000302271 GCTCATAGTTTCAAGTCTGAT pLKO_005 2918 CDS 100% 4.950 3.465 N Trim33 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001079830.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.