Transcript: Human NM_001098208.1

Homo sapiens heterogeneous nuclear ribonucleoprotein F (HNRNPF), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-16
Taxon:
Homo sapiens (human)
Gene:
HNRNPF (3185)
Length:
2773
CDS:
488..1735

Additional Resources:

NCBI RefSeq record:
NM_001098208.1
NBCI Gene record:
HNRNPF (3185)

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001098208.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000230711 GCAATTAAGAGCAGTTATAAT pLKO_005 1788 3UTR 100% 15.000 21.000 N HNRNPF n/a
2 TRCN0000230710 AGCGACCGAGAACGACATTTA pLKO_005 1384 CDS 100% 13.200 18.480 N HNRNPF n/a
3 TRCN0000001234 CGAGAACGACATTTACAACTT pLKO.1 1390 CDS 100% 4.950 6.930 N HNRNPF n/a
4 TRCN0000218480 CAATATGCAGCACAGATATAT pLKO_005 1537 CDS 100% 15.000 10.500 N HNRNPF n/a
5 TRCN0000230709 ACAGGTACATTGAGGTGTTTA pLKO_005 1020 CDS 100% 13.200 9.240 N HNRNPF n/a
6 TRCN0000230708 TGGATCAGAAGATGATGTAAA pLKO_005 670 CDS 100% 13.200 9.240 N HNRNPF n/a
7 TRCN0000001237 CGCAGGTGTCCATTTCATCTA pLKO.1 607 CDS 100% 4.950 3.465 N HNRNPF n/a
8 TRCN0000001236 GAAGGCTCTAGGGAAACACAA pLKO.1 985 CDS 100% 4.950 3.465 N HNRNPF n/a
9 TRCN0000001233 TGGCACAGATTACTCAGCAAA pLKO.1 2355 3UTR 100% 4.950 3.465 N HNRNPF n/a
10 TRCN0000001235 GAGGTACATTGGCATCGTGAA pLKO.1 1138 CDS 100% 4.050 2.835 N HNRNPF n/a
11 TRCN0000109264 CCATTTGGATGCACAAAGGAA pLKO.1 842 CDS 100% 3.000 2.100 N Hnrnpf n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001098208.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06389 pDONR223 100% 99.9% 99.7% None 1021G>T n/a
2 ccsbBroad304_06389 pLX_304 0% 99.9% 99.7% V5 1021G>T n/a
3 TRCN0000467459 AGTGAAGATAGCCTCTACCCTTTA pLX_317 36% 99.9% 99.7% V5 1021G>T n/a
4 ccsbBroadEn_06388 pDONR223 100% 99.9% 100% None 810A>G n/a
5 ccsbBroad304_06388 pLX_304 0% 99.9% 100% V5 810A>G n/a
6 TRCN0000468107 TCTATCCATATGGATCACAATGTT pLX_317 36.8% 99.9% 100% V5 810A>G n/a
7 ccsbBroadEn_15452 pDONR223 0% 99.9% 99.7% None 260A>G n/a
8 ccsbBroad304_15452 pLX_304 0% 99.9% 99.7% V5 260A>G n/a
9 TRCN0000468863 TGCTTGCAGCATATGAAACTAATT pLX_317 36.7% 99.8% 99% V5 (not translated due to frame shift) 260A>G;1236delT n/a
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