Transcript: Human NM_001105659.2

Homo sapiens leucine rich repeats and IQ motif containing 3 (LRRIQ3), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-05-01
Taxon:
Homo sapiens (human)
Gene:
LRRIQ3 (127255)
Length:
2854
CDS:
182..2056

Additional Resources:

NCBI RefSeq record:
NM_001105659.2
NBCI Gene record:
LRRIQ3 (127255)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001105659.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000153671 CGCTGGATCATCATGTGATTT pLKO.1 639 CDS 100% 13.200 9.240 N LRRIQ3 n/a
2 TRCN0000150760 GAAGTTCAATGGCCTTCATTT pLKO.1 280 CDS 100% 13.200 9.240 N LRRIQ3 n/a
3 TRCN0000151749 CATGAAGAATGGAGTCACTAT pLKO.1 218 CDS 100% 4.950 3.465 N LRRIQ3 n/a
4 TRCN0000150323 CTTGCATCTCTCTTAGAGTAT pLKO.1 324 CDS 100% 4.950 3.465 N LRRIQ3 n/a
5 TRCN0000153050 GCCCTCACTATGTTTGATTGT pLKO.1 557 CDS 100% 4.950 3.465 N LRRIQ3 n/a
6 TRCN0000152056 CCTGAAAGATTCAAAGCATGT pLKO.1 692 CDS 100% 4.050 2.835 N LRRIQ3 n/a
7 TRCN0000152259 CATCTCTCTTAGAGTATGCAT pLKO.1 328 CDS 100% 3.000 2.100 N LRRIQ3 n/a
8 TRCN0000153140 GCATCTCTCTTAGAGTATGCA pLKO.1 327 CDS 100% 3.000 2.100 N LRRIQ3 n/a
9 TRCN0000152755 GTGTATTATCTGCCTGTCCAA pLKO.1 528 CDS 100% 2.640 1.848 N LRRIQ3 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001105659.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13124 pDONR223 100% 35.4% 35.4% None 1_1209del n/a
2 ccsbBroad304_13124 pLX_304 0% 35.4% 35.4% V5 1_1209del n/a
3 TRCN0000480462 GTGATGCGAAACGTCACAGCTCGC pLX_317 59.2% 35.4% 35.4% V5 1_1209del n/a
4 ccsbBroadEn_13125 pDONR223 100% 31.3% 30.7% None (many diffs) n/a
5 ccsbBroad304_13125 pLX_304 0% 31.3% 30.7% V5 (many diffs) n/a
6 TRCN0000479115 TTGGGTACTTATATCCACCCCCAT pLX_317 75.6% 31.3% 30.7% V5 (many diffs) n/a
Download CSV