Transcript: Mouse NM_001110252.2

Mus musculus hepsin (Hpn), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-13
Taxon:
Mus musculus (mouse)
Gene:
Hpn (15451)
Length:
1866
CDS:
246..1556

Additional Resources:

NCBI RefSeq record:
NM_001110252.2
NBCI Gene record:
Hpn (15451)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001110252.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000222318 CGACTTCTACGGGAATCAGAT pLKO.1 1277 CDS 100% 4.950 3.960 N Hpn n/a
2 TRCN0000304737 CGACTTCTACGGGAATCAGAT pLKO_005 1277 CDS 100% 4.950 3.960 N Hpn n/a
3 TRCN0000054789 GTGGATCTTCAAGGCCATAAA pLKO.1 1496 CDS 100% 13.200 9.240 N Hpn n/a
4 TRCN0000302363 GTGGATCTTCAAGGCCATAAA pLKO_005 1496 CDS 100% 13.200 9.240 N Hpn n/a
5 TRCN0000222317 CCTGCCTCTCACAGAATACAT pLKO.1 1100 CDS 100% 5.625 3.938 N Hpn n/a
6 TRCN0000222314 CCCATCATAAGCAACGAAGTT pLKO.1 1245 CDS 100% 4.950 3.465 N Hpn n/a
7 TRCN0000304738 CCCATCATAAGCAACGAAGTT pLKO_005 1245 CDS 100% 4.950 3.465 N Hpn n/a
8 TRCN0000054791 GTACACCAAAGTCACTGACTT pLKO.1 1469 CDS 100% 4.950 3.465 N Hpn n/a
9 TRCN0000054788 TGCTGGATGTCATCTCTGTAT pLKO.1 694 CDS 100% 4.950 3.465 N Hpn n/a
10 TRCN0000054792 CTGCTGTTCCTGACAGGCATT pLKO.1 378 CDS 100% 4.050 2.835 N Hpn n/a
11 TRCN0000302364 CTGCTGTTCCTGACAGGCATT pLKO_005 378 CDS 100% 4.050 2.835 N Hpn n/a
12 TRCN0000222315 GCCATAAAGACTCACTCCGAA pLKO.1 1509 CDS 100% 2.640 1.848 N Hpn n/a
13 TRCN0000054790 CAACGGCACATCGGGCTTCTT pLKO.1 635 CDS 100% 1.650 1.155 N Hpn n/a
14 TRCN0000302365 CAACGGCACATCGGGCTTCTT pLKO_005 635 CDS 100% 1.650 1.155 N Hpn n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001110252.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06398 pDONR223 100% 81% 83.7% None (many diffs) n/a
2 ccsbBroad304_06398 pLX_304 0% 81% 83.7% V5 (many diffs) n/a
3 TRCN0000481151 GGTAATGCAGGCCTGACCACTTTC pLX_317 32.1% 81% 83.7% V5 (many diffs) n/a
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